Click here to switch to the map view.

The map label for this gene is ymdC [H]

Identifier: 117919872

GI number: 117919872

Start: 1653596

End: 1655230

Strand: Direct

Name: ymdC [H]

Synonym: Shewana3_1424

Alternate gene names: 117919872

Gene position: 1653596-1655230 (Clockwise)

Preceding gene: 117919871

Following gene: 117919873

Centisome position: 33.26

GC content: 50.28

Gene sequence:

>1635_bases
GTGACGATATTAGGGATATCATCGCGCAATTGTGGCGCCACCTTCGCCAACACAATCGCTCAGCATCTTGCCAAGGAGAT
AGGGCAACAACGCAAGAGTTATCCCGTCAAACAAATGGTATTTCGTCTCTCGCTTCCCTTTTGGGGGCTTTTGCTCCTGT
TGATTAACGGTTGTAGCTCAATGGCAGAATTACCCGCAAAATCAATTGAAACAGCCTATCCCTTAGCCGAAAACTCCACC
CTGTATCAGGCGGTAAAAACCGCCATCGCGCAGCATTCCGAGCAAACTGGGGTGTTTCCCCTCGGTGATGGGGTCGATGC
CTTCGTCGCTCGCTTGTTGCTGATTGAGTCCGCCGTCAGTAGTATCGATCTGCAATATTATATTTATCGTAATGATGAAA
CCGGCCGCTTGCTGACGTGGTTTTTATTGGATGCCGCGGATCGCGGGGTGCGAGTGCGTTTATTGCTGGATGATATGACC
AGTGCCGACATGGACGAGCAGCTAATCGCCCTCGCGCGCCACCCTAACATCAATATTCGGCTGTTTAACCCAAGCACAGA
GCGTAATTACCGCGGCCTTGCCATGTTGTTTGGTTTTAGTCGCTTAAACCACAGAATGCACAATAAATCGTTCACAGTGG
ACAATGTGATGACCATTGTTGGTGGACGTAATATTGGTGATGAGTATTTTGCGGCGAATCGTGACCTCGAATTTGGTGAC
TTTGACCTGTTAGCCATGGGTGATGCCGTGCCTAAGGTATCCGACGAATTTGATCGATATTGGAATGCCGACACGACCCA
TCCAATTGAAGTCTTAAGTGACCATAATCCCACGCATGCGGAGCTTGAGGCGCTGGCGCAGCGGGTGAGTGAACAGCGTG
AACAGTCCAAATCCAGCGAATATGTGAAGCGCTTAGCCGAAAGCCAATTATTGGCAAATTTGCAGAGCGATAGCATGACT
TGGTTTTGGGGCAAAGCCTTAGTGCTGGTTGACCCGCCCGATAAATTGCAGCAGGGCGATAAATCCACTTGGTTGCTCAG
CCAGTTATTACCTTACCTGACGCAGGTGGAGTCCGAGTTACTCATCATTTCGCCTTATTTTGTGCCGACGCAATCGGGAA
CCGATCTGCTCACACTTTTGGCGCAGTCGGGTAAGCGGGTACGAGTCATTACTAATAGTCTGGCGGCGACCGATGTGCTG
GCGGTGCATGCGGGATATAAGCAATATCGAAAAACCTTGTTGGCCGCGGGCGTCGAAATCTACGAAGTGAAAGCACAGGC
AGGGGAGCGCTCCCACAGCTGGCATGGCAGCTCAAAAAGCAGCCTGCACGCAAAATCATTTGTATTTGATAATAATCAGA
TATTTGTGGGCTCATTTAATTTTGATCCCCGTTCTGCTGCGGTGAATACCGAGCTTGGATTGTTGATCACTCAGCCACAA
TTGAGTGGCCATGTCAGCCATAATATTGAGGAGAAGCTCGCGACGAATACCTATCGACTCGCCTTGGAGGATGGCGATCT
CGTCTGGTGGGACGATGGGGCGCAGCAGCGCTACGACAGTGAGCCAGACGCGGGATTTTGGCGTATCTTTGTCGCCGATT
TTCTCGGGCTATTGCCAATAGAGTCACAGTTATAA

Upstream 100 bases:

>100_bases
ATTGCGTTTACTGCCGAAGGTTGGGATCAGTTTGCCTTCGATGTGCTCTATGCGTTACAGGAATAACCATCTGAATTCAT
AAAATAAGGAATACCATTTA

Downstream 100 bases:

>100_bases
GCTAAGGTGACTAAATAGCGGTTTTAGCTATCGCAACTCATTTTGTGAACCGTTATGATAAAAACAGAATAGTTAATGAG
AATTTAGGTTTATGAAAAGC

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 543

Protein sequence:

>544_residues
MTILGISSRNCGATFANTIAQHLAKEIGQQRKSYPVKQMVFRLSLPFWGLLLLLINGCSSMAELPAKSIETAYPLAENST
LYQAVKTAIAQHSEQTGVFPLGDGVDAFVARLLLIESAVSSIDLQYYIYRNDETGRLLTWFLLDAADRGVRVRLLLDDMT
SADMDEQLIALARHPNINIRLFNPSTERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAANRDLEFGD
FDLLAMGDAVPKVSDEFDRYWNADTTHPIEVLSDHNPTHAELEALAQRVSEQREQSKSSEYVKRLAESQLLANLQSDSMT
WFWGKALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESELLIISPYFVPTQSGTDLLTLLAQSGKRVRVITNSLAATDVL
AVHAGYKQYRKTLLAAGVEIYEVKAQAGERSHSWHGSSKSSLHAKSFVFDNNQIFVGSFNFDPRSAAVNTELGLLITQPQ
LSGHVSHNIEEKLATNTYRLALEDGDLVWWDDGAQQRYDSEPDAGFWRIFVADFLGLLPIESQL

Sequences:

>Translated_544_residues
MTILGISSRNCGATFANTIAQHLAKEIGQQRKSYPVKQMVFRLSLPFWGLLLLLINGCSSMAELPAKSIETAYPLAENST
LYQAVKTAIAQHSEQTGVFPLGDGVDAFVARLLLIESAVSSIDLQYYIYRNDETGRLLTWFLLDAADRGVRVRLLLDDMT
SADMDEQLIALARHPNINIRLFNPSTERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAANRDLEFGD
FDLLAMGDAVPKVSDEFDRYWNADTTHPIEVLSDHNPTHAELEALAQRVSEQREQSKSSEYVKRLAESQLLANLQSDSMT
WFWGKALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESELLIISPYFVPTQSGTDLLTLLAQSGKRVRVITNSLAATDVL
AVHAGYKQYRKTLLAAGVEIYEVKAQAGERSHSWHGSSKSSLHAKSFVFDNNQIFVGSFNFDPRSAAVNTELGLLITQPQ
LSGHVSHNIEEKLATNTYRLALEDGDLVWWDDGAQQRYDSEPDAGFWRIFVADFLGLLPIESQL
>Mature_543_residues
TILGISSRNCGATFANTIAQHLAKEIGQQRKSYPVKQMVFRLSLPFWGLLLLLINGCSSMAELPAKSIETAYPLAENSTL
YQAVKTAIAQHSEQTGVFPLGDGVDAFVARLLLIESAVSSIDLQYYIYRNDETGRLLTWFLLDAADRGVRVRLLLDDMTS
ADMDEQLIALARHPNINIRLFNPSTERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAANRDLEFGDF
DLLAMGDAVPKVSDEFDRYWNADTTHPIEVLSDHNPTHAELEALAQRVSEQREQSKSSEYVKRLAESQLLANLQSDSMTW
FWGKALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESELLIISPYFVPTQSGTDLLTLLAQSGKRVRVITNSLAATDVLA
VHAGYKQYRKTLLAAGVEIYEVKAQAGERSHSWHGSSKSSLHAKSFVFDNNQIFVGSFNFDPRSAAVNTELGLLITQPQL
SGHVSHNIEEKLATNTYRLALEDGDLVWWDDGAQQRYDSEPDAGFWRIFVADFLGLLPIESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=470, Percent_Identity=40.6382978723404, Blast_Score=323, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60886; Mature: 60754

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILGISSRNCGATFANTIAQHLAKEIGQQRKSYPVKQMVFRLSLPFWGLLLLLINGCSS
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCHHH
MAELPAKSIETAYPLAENSTLYQAVKTAIAQHSEQTGVFPLGDGVDAFVARLLLIESAVS
HHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHH
SIDLQYYIYRNDETGRLLTWFLLDAADRGVRVRLLLDDMTSADMDEQLIALARHPNINIR
HCEEEEEEEECCCCCCEEEEEEHHHCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEE
LFNPSTERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAANRDLEFGD
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHEECCCCCCHHHHHCCCCCCCCC
FDLLAMGDAVPKVSDEFDRYWNADTTHPIEVLSDHNPTHAELEALAQRVSEQREQSKSSE
EEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YVKRLAESQLLANLQSDSMTWFWGKALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESEL
HHHHHHHHHHHHHHCCCCEEEEECEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHCCCE
LIISPYFVPTQSGTDLLTLLAQSGKRVRVITNSLAATDVLAVHAGYKQYRKTLLAAGVEI
EEEECEEECCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEE
YEVKAQAGERSHSWHGSSKSSLHAKSFVFDNNQIFVGSFNFDPRSAAVNTELGLLITQPQ
EEEEHHCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEECCC
LSGHVSHNIEEKLATNTYRLALEDGDLVWWDDGAQQRYDSEPDAGFWRIFVADFLGLLPI
CCCCHHCCHHHHHCCCEEEEEEECCCEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHCCC
ESQL
CCCC
>Mature Secondary Structure 
TILGISSRNCGATFANTIAQHLAKEIGQQRKSYPVKQMVFRLSLPFWGLLLLLINGCSS
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCHHH
MAELPAKSIETAYPLAENSTLYQAVKTAIAQHSEQTGVFPLGDGVDAFVARLLLIESAVS
HHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHH
SIDLQYYIYRNDETGRLLTWFLLDAADRGVRVRLLLDDMTSADMDEQLIALARHPNINIR
HCEEEEEEEECCCCCCEEEEEEHHHCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEE
LFNPSTERNYRGLAMLFGFSRLNHRMHNKSFTVDNVMTIVGGRNIGDEYFAANRDLEFGD
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHEECCCCCCHHHHHCCCCCCCCC
FDLLAMGDAVPKVSDEFDRYWNADTTHPIEVLSDHNPTHAELEALAQRVSEQREQSKSSE
EEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YVKRLAESQLLANLQSDSMTWFWGKALVLVDPPDKLQQGDKSTWLLSQLLPYLTQVESEL
HHHHHHHHHHHHHHCCCCEEEEECEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHCCCE
LIISPYFVPTQSGTDLLTLLAQSGKRVRVITNSLAATDVLAVHAGYKQYRKTLLAAGVEI
EEEECEEECCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEE
YEVKAQAGERSHSWHGSSKSSLHAKSFVFDNNQIFVGSFNFDPRSAAVNTELGLLITQPQ
EEEEHHCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEECCC
LSGHVSHNIEEKLATNTYRLALEDGDLVWWDDGAQQRYDSEPDAGFWRIFVADFLGLLPI
CCCCHHCCHHHHHCCCEEEEEEECCCEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHCCC
ESQL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]