Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
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Accession | NC_008577 |
Length | 4,972,204 |
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The map label for this gene is 117919833
Identifier: 117919833
GI number: 117919833
Start: 1600280
End: 1600924
Strand: Direct
Name: 117919833
Synonym: Shewana3_1385
Alternate gene names: NA
Gene position: 1600280-1600924 (Clockwise)
Preceding gene: 117919832
Following gene: 117919834
Centisome position: 32.18
GC content: 30.54
Gene sequence:
>645_bases ATGTCAATTATTGTGGAGTCTTTAGGTGTTTGGCTTCGATATGTAGGCTCGCTATACGATGAACCAGCTTTAGGTTACTC TTCGCATGTAAGGCTCGCAACTCTCGGTCGATTTTTCATTTTAATCTCTGCGCCTTTACTTGGTTTACTAATAGATAATG GTATTGACTCAAAAAGCATAGCATATATAGGTTTTTTGACTTTTTTGCTTGTTTTTGTATTTTTACTGATAAGTTTTAAC GTGAGAGTTACCGAATTTATCTTTAAAATATATCATCTTTTGAATAGAGAAACTTTGTCATCAGGTGTAAAAAATGACTT TGCTAAATCATTTTTTAAAATTACGGTTAATAAAAAGTTAGTTTTGTGCTCGAGTTTTTCATTTTTAATGACAGCTAGTG GTATTTTAATTGTAAATTATTTAGCTACTATTTTTATTGATAATAGAGCGATGATTGTCCAGATGTCGGCTTTTATTACT ATGTTTGGCACTTTGATTCATGCTTTCTTGGTAGATCCAGTTTTAGCAAGGAATTGTGATGAAAATATTGGGAATGCATT ATCTGCTATAGTAAGTTTTATTTATGGGAGATTATTTTCATCTATTTTATTAACATTGTTTTTTGGCTTTTTGGGATTGT TATGA
Upstream 100 bases:
>100_bases TAATTAGTTCAAAAAGGCAGTTCTTGAATATATGGCGCCCTTCGTTCATTAATTGGTTATCAAGATGGTAATATCATTTG TTGTCGCTATTTTTATAGCC
Downstream 100 bases:
>100_bases ATGAAAGAGTAATCTATTTACGTTTGGTTGGTGGGCTTGGTAATCAATTGTATCAATTTGCTTTCGCTTATTATCTTAGA GAAAGATTCGATTTTGATAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSIIVESLGVWLRYVGSLYDEPALGYSSHVRLATLGRFFILISAPLLGLLIDNGIDSKSIAYIGFLTFLLVFVFLLISFN VRVTEFIFKIYHLLNRETLSSGVKNDFAKSFFKITVNKKLVLCSSFSFLMTASGILIVNYLATIFIDNRAMIVQMSAFIT MFGTLIHAFLVDPVLARNCDENIGNALSAIVSFIYGRLFSSILLTLFFGFLGLL
Sequences:
>Translated_214_residues MSIIVESLGVWLRYVGSLYDEPALGYSSHVRLATLGRFFILISAPLLGLLIDNGIDSKSIAYIGFLTFLLVFVFLLISFN VRVTEFIFKIYHLLNRETLSSGVKNDFAKSFFKITVNKKLVLCSSFSFLMTASGILIVNYLATIFIDNRAMIVQMSAFIT MFGTLIHAFLVDPVLARNCDENIGNALSAIVSFIYGRLFSSILLTLFFGFLGLL >Mature_213_residues SIIVESLGVWLRYVGSLYDEPALGYSSHVRLATLGRFFILISAPLLGLLIDNGIDSKSIAYIGFLTFLLVFVFLLISFNV RVTEFIFKIYHLLNRETLSSGVKNDFAKSFFKITVNKKLVLCSSFSFLMTASGILIVNYLATIFIDNRAMIVQMSAFITM FGTLIHAFLVDPVLARNCDENIGNALSAIVSFIYGRLFSSILLTLFFGFLGLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23876; Mature: 23745
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIIVESLGVWLRYVGSLYDEPALGYSSHVRLATLGRFFILISAPLLGLLIDNGIDSKSI CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH AYIGFLTFLLVFVFLLISFNVRVTEFIFKIYHLLNRETLSSGVKNDFAKSFFKITVNKKL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE VLCSSFSFLMTASGILIVNYLATIFIDNRAMIVQMSAFITMFGTLIHAFLVDPVLARNCD EECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ENIGNALSAIVSFIYGRLFSSILLTLFFGFLGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SIIVESLGVWLRYVGSLYDEPALGYSSHVRLATLGRFFILISAPLLGLLIDNGIDSKSI HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH AYIGFLTFLLVFVFLLISFNVRVTEFIFKIYHLLNRETLSSGVKNDFAKSFFKITVNKKL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE VLCSSFSFLMTASGILIVNYLATIFIDNRAMIVQMSAFITMFGTLIHAFLVDPVLARNCD EECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ENIGNALSAIVSFIYGRLFSSILLTLFFGFLGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA