Click here to switch to the map view.

The map label for this gene is fliR [H]

Identifier: 117919802

GI number: 117919802

Start: 1565794

End: 1566591

Strand: Direct

Name: fliR [H]

Synonym: Shewana3_1354

Alternate gene names: 117919802

Gene position: 1565794-1566591 (Clockwise)

Preceding gene: 117919801

Following gene: 117919803

Centisome position: 31.49

GC content: 47.87

Gene sequence:

>798_bases
ATGGAGCTGCTGCTCGACACCTTAATGCAAACCATCGCCTCTTACATGTGGCCATTGTTTCGTGTGACCAGCATGTTGAT
GGTCATGGTGGTGTTTGGTGCTACAACAACCCCGACTCGAGTCCGTTTACTGTTAGCCGTTACCATCACGCTTGCCATTG
CGCCAGTTTTGCCCCCCGTAAAGGATGCCGAACTCTTTTCCTTAAGCGCTGTTTTTATTACCGCTCAGCAAATTATTATT
GGTGTCGCCATGGGTTTTGTGACCCAAATGGTGATGCAAACCTTTGTGTTAACGGGCCAGATCATTGGTATGCAAACCAG
TTTAGGTTTTGCTTCTATGGTTGACCCTGGCTCTGGTCAACAAACGCCAGTGATAGGTAACTTCTTTTTGTTACTCGCAA
CGTTGATTTTTCTCGCCGTCGATGGACACCTGTTGATGATCCGCATGCTTGTCGCCAGTTTTGAGACCTTACCGATTTCG
AATCAAGGATTAACCTTGACAAGTTATCGCTCGCTGGCTGAATGGGGCTCCTATATGTTTGGCGCGGCACTGACTATGTC
GCTCTCGGCGATTATTGCCTTACTACTTGTTAACTTATCCTTTGGGGTAATGACCCGCGCCGCGCCGCAGCTGAACATTT
TCTCGATAGGTTTCCCCATCACTATGATTGGTGGACTGCTGATTTTATGGTTGACCTTGACTCCCGTAATGGCCCATTTC
GAAGAAGTCTGGGCGTCGGCACAGCTTTTGCTTTGCGATATTTTAGGGCTTCAGTGTCAAGCCAATGGCATATTCTAA

Upstream 100 bases:

>100_bases
TTACTGGCCTTGATGGTCATGGGACACTGGTTAGTCCAAACCCTGATGGATTTCTTTATCGAAATGGTTAACCGCATTCC
CCAAGTGGTGGGTTAAGTCC

Downstream 100 bases:

>100_bases
CCGGATAGGAACGCGTAATGGCTGAAGAAAGTAGCGGCGAACGCAGCGAGGAACCCACCGGGAGGCGCCTCGAACAGGCG
CGAGAAAAAGGGCAGGTAGC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MELLLDTLMQTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPVKDAELFSLSAVFITAQQIII
GVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRSLAEWGSYMFGAALTMSLSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
EEVWASAQLLLCDILGLQCQANGIF

Sequences:

>Translated_265_residues
MELLLDTLMQTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPVKDAELFSLSAVFITAQQIII
GVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRSLAEWGSYMFGAALTMSLSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
EEVWASAQLLLCDILGLQCQANGIF
>Mature_265_residues
MELLLDTLMQTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPVKDAELFSLSAVFITAQQIII
GVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRSLAEWGSYMFGAALTMSLSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
EEVWASAQLLLCDILGLQCQANGIF

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=243, Percent_Identity=40.3292181069959, Blast_Score=149, Evalue=2e-37,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28692; Mature: 28692

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLLDTLMQTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
KDAELFSLSAVFITAQQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHCCCCCCC
QTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
GAALTMSLSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
EEVWASAQLLLCDILGLQCQANGIF
HHHHHHHHHHHHHHHCCEECCCCCC
>Mature Secondary Structure
MELLLDTLMQTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
KDAELFSLSAVFITAQQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHCCCCCCC
QTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
GAALTMSLSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
EEVWASAQLLLCDILGLQCQANGIF
HHHHHHHHHHHHHHHCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609 [H]