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The map label for this gene is yggU [C]

Identifier: 117919640

GI number: 117919640

Start: 1399271

End: 1399561

Strand: Reverse

Name: yggU [C]

Synonym: Shewana3_1191

Alternate gene names: 117919640

Gene position: 1399561-1399271 (Counterclockwise)

Preceding gene: 117919641

Following gene: 117919639

Centisome position: 28.15

GC content: 48.11

Gene sequence:

>291_bases
ATGAGCGCAGTCATTATGCAGCAAGGTGACTTGCTGCTTAATTTGTATATTCAACCCAAAGCGAGTCGCGATCAGATAGT
TGGGCTACACGGTGATGAGTTAAAAGTCGCCATCACAGCACCGCCTATCGATGGCAAGGCCAACGCCCATTTAAGCAAGT
ATTTAGCCAAGGCCTTTAAAGTCCCTAAAAGCGATGTTCACATCCTTAAGGGCGAATTAGGACGTCATAAGCAGGTACGC
ATTAGCCCCCCCAAAAACGTCCCCGCAGAAATCGCGACACTGCTCGAATAA

Upstream 100 bases:

>100_bases
CCATTGGTGGCTTAGATCTGTCGGTGATGTTAGTGATTATCGGCATGAACTTTATCAACATGCTGTTGGCGCAATACGTA
CCATTTTGGGCCGTGATTTA

Downstream 100 bases:

>100_bases
ACACAGCGTTGGAAGTCTCCTTCCTGCGACCTATACTCAAGTAATCCCTCATATGAAGGTACAACATCATGTTACGTAAT
CTCCTTATTATGCTCGCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MSAVIMQQGDLLLNLYIQPKASRDQIVGLHGDELKVAITAPPIDGKANAHLSKYLAKAFKVPKSDVHILKGELGRHKQVR
ISPPKNVPAEIATLLE

Sequences:

>Translated_96_residues
MSAVIMQQGDLLLNLYIQPKASRDQIVGLHGDELKVAITAPPIDGKANAHLSKYLAKAFKVPKSDVHILKGELGRHKQVR
ISPPKNVPAEIATLLE
>Mature_95_residues
SAVIMQQGDLLLNLYIQPKASRDQIVGLHGDELKVAITAPPIDGKANAHLSKYLAKAFKVPKSDVHILKGELGRHKQVRI
SPPKNVPAEIATLLE

Specific function: Unknown

COG id: COG1872

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0235 family [H]

Homologues:

Organism=Escherichia coli, GI87082189, Length=96, Percent_Identity=64.5833333333333, Blast_Score=128, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005228
- InterPro:   IPR003746 [H]

Pfam domain/function: PF02594 DUF167 [H]

EC number: NA

Molecular weight: Translated: 10455; Mature: 10324

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVIMQQGDLLLNLYIQPKASRDQIVGLHGDELKVAITAPPIDGKANAHLSKYLAKAFK
CCEEEEECCCEEEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
VPKSDVHILKGELGRHKQVRISPPKNVPAEIATLLE
CCCCCEEEEECCCCCCCEEEECCCCCCHHHHHHHCC
>Mature Secondary Structure 
SAVIMQQGDLLLNLYIQPKASRDQIVGLHGDELKVAITAPPIDGKANAHLSKYLAKAFK
CEEEEECCCEEEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
VPKSDVHILKGELGRHKQVRISPPKNVPAEIATLLE
CCCCCEEEEECCCCCCCEEEECCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA