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The map label for this gene is yeaM [H]

Identifier: 117919530

GI number: 117919530

Start: 1268883

End: 1269650

Strand: Reverse

Name: yeaM [H]

Synonym: Shewana3_1081

Alternate gene names: 117919530

Gene position: 1269650-1268883 (Counterclockwise)

Preceding gene: 117919532

Following gene: 117919529

Centisome position: 25.53

GC content: 51.04

Gene sequence:

>768_bases
ATGGCCTTTATTCAACCCGAGCAGCAATTTAATCCCGATGCCTTAGACAACCTAGTGATCGGCATTGCCGCCGAAATGGG
CGAGCATGACTCAGGCGTACATCAGCATAGCAAGGCTCAGTTGCTCTACTCATCGGCGGGATGTATGCGGTTTAACTTAG
CCGATACTCAAGTCGTGTTGCCGCCAACCCGTGCGGCTTGGCTGCCCGCAGGCGTGATCCACCAAGTCACAATGCGCAAT
GTTGTGGCGTATCGTTCACTCTACTTTGAGCCTGAAACCGTGGCGTCTTTGCCGGATAACGTCACGATTTTCCATGTGGA
TCCGTTACTCAAAGCGTTAATCGACACTATGTCCTTTTGGCCTTGGGACAAACCCAGACACAGCCAGCACAATGCCTTTG
CCCTGCTGATTGAAGAATTAGTCAATGCGGATGCAGAGAATTTAAGCTTACCCCTGCCCAAGGACAAACGGCTACAGAGC
TGGCTTAAGCAATTGCAGCAACAGCAAAAAATCCCCGCCAGCTTGCAGGAAATGGCCATTGAAATTGGCGCTAGCGAACG
CACCATCAGCCGTATCTTTAGCAACGAAACGGGCATGGCTTATCAGGCGTGGCGGCAGCAATGGCGCTTACTATCAGCTA
TTGAGCAATTAGCTGCGGGCGCCTCGGTGGCGCAGGTAGGATTTAACTTACAGTTTTCCAGCGACAGCGCCTTTATCAGC
TTTTTTAAACAATATACCGGCACCACTCCGGCGCAATACTTTAGATAA

Upstream 100 bases:

>100_bases
AAAACGGCGCTCCATACTTGTCAAAGAGGGCGCAGTATAGATAGGATCCCTAAGTGACAATTAACGACACTTAGACAAAA
AACATCAAAAATAAGACAGC

Downstream 100 bases:

>100_bases
TCAATCTGTTAACCTAACTAAAAATCCATTAAACACAACGACACACGGCAACTCCCGATTAGACCCATTGCCGTTTTGCC
TGCTCGCGCCATTAGCCGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAFIQPEQQFNPDALDNLVIGIAAEMGEHDSGVHQHSKAQLLYSSAGCMRFNLADTQVVLPPTRAAWLPAGVIHQVTMRN
VVAYRSLYFEPETVASLPDNVTIFHVDPLLKALIDTMSFWPWDKPRHSQHNAFALLIEELVNADAENLSLPLPKDKRLQS
WLKQLQQQQKIPASLQEMAIEIGASERTISRIFSNETGMAYQAWRQQWRLLSAIEQLAAGASVAQVGFNLQFSSDSAFIS
FFKQYTGTTPAQYFR

Sequences:

>Translated_255_residues
MAFIQPEQQFNPDALDNLVIGIAAEMGEHDSGVHQHSKAQLLYSSAGCMRFNLADTQVVLPPTRAAWLPAGVIHQVTMRN
VVAYRSLYFEPETVASLPDNVTIFHVDPLLKALIDTMSFWPWDKPRHSQHNAFALLIEELVNADAENLSLPLPKDKRLQS
WLKQLQQQQKIPASLQEMAIEIGASERTISRIFSNETGMAYQAWRQQWRLLSAIEQLAAGASVAQVGFNLQFSSDSAFIS
FFKQYTGTTPAQYFR
>Mature_254_residues
AFIQPEQQFNPDALDNLVIGIAAEMGEHDSGVHQHSKAQLLYSSAGCMRFNLADTQVVLPPTRAAWLPAGVIHQVTMRNV
VAYRSLYFEPETVASLPDNVTIFHVDPLLKALIDTMSFWPWDKPRHSQHNAFALLIEELVNADAENLSLPLPKDKRLQSW
LKQLQQQQKIPASLQEMAIEIGASERTISRIFSNETGMAYQAWRQQWRLLSAIEQLAAGASVAQVGFNLQFSSDSAFISF
FKQYTGTTPAQYFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=250, Percent_Identity=28, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28692; Mature: 28561

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFIQPEQQFNPDALDNLVIGIAAEMGEHDSGVHQHSKAQLLYSSAGCMRFNLADTQVVL
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEE
PPTRAAWLPAGVIHQVTMRNVVAYRSLYFEPETVASLPDNVTIFHVDPLLKALIDTMSFW
CCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHCC
PWDKPRHSQHNAFALLIEELVNADAENLSLPLPKDKRLQSWLKQLQQQQKIPASLQEMAI
CCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
EIGASERTISRIFSNETGMAYQAWRQQWRLLSAIEQLAAGASVAQVGFNLQFSSDSAFIS
HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEECCCHHHHH
FFKQYTGTTPAQYFR
HHHHHCCCCHHHHCC
>Mature Secondary Structure 
AFIQPEQQFNPDALDNLVIGIAAEMGEHDSGVHQHSKAQLLYSSAGCMRFNLADTQVVL
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEE
PPTRAAWLPAGVIHQVTMRNVVAYRSLYFEPETVASLPDNVTIFHVDPLLKALIDTMSFW
CCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHCC
PWDKPRHSQHNAFALLIEELVNADAENLSLPLPKDKRLQSWLKQLQQQQKIPASLQEMAI
CCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
EIGASERTISRIFSNETGMAYQAWRQQWRLLSAIEQLAAGASVAQVGFNLQFSSDSAFIS
HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEECCCHHHHH
FFKQYTGTTPAQYFR
HHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]