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The map label for this gene is torD

Identifier: 117919503

GI number: 117919503

Start: 1235485

End: 1236114

Strand: Reverse

Name: torD

Synonym: Shewana3_1054

Alternate gene names: 117919503

Gene position: 1236114-1235485 (Counterclockwise)

Preceding gene: 117919504

Following gene: 117919501

Centisome position: 24.86

GC content: 49.84

Gene sequence:

>630_bases
ATGAGCAATGTCGATATCAATCATGCCAGAGCCTTAGTGTATCAGCTGCTGTCTTCTCTGTTTGCCCGTGAAATTGATGA
GCAGCGCCTTAAGCAACTCACCAGTGAGCAAGCCCAGCAATTCTGGACACAACTGGGTTATGCGCCCGAGTTTAGTGCGT
CAGTGGCCAGCATACAGAAGGTGCTAAATGGCTTAACGAGCGATGAAGCCTTGCTCGAACTGGCCGCCGATTACTGCGGT
TTATTCCTCGTAGGCACAAAGCACAGCGCCTCACCCTATGCCAGCCTGTACTTGAATCGCGAGGAAGAACCCTTGCTATT
TGGGCAGCAGCATCAACAAATGAGCGAGTTTTTACACCAGAGCAAACTACAAGTACAGAGTCACTTCCCTGAGCCTGCCG
ATCACTTAGCCGTGATCTTAGCCTATATGGGACACTTAGCTTGCCACAGTGAAGATGCCGCCCAGTTAAGCTTTCTAAAT
GCCTGTATAGACTCATGGTTAGCCAAGTTTGTCGCCAAGGTCGTTGAGTGCGATAGCAAGCACAGCAATGGCTTTTACAG
CGCTCTCGCCACACTCACCTTGGCTTGGGTGCAGCAAGATAAACAGCAGTTAGAACAGGCAATGCATTAA

Upstream 100 bases:

>100_bases
TCCTTCGATGGTCCTATCGAAGTCGAAATCTAACCGAGCCAATAAGGCGATGCGCCTAGTTAACTAGGCGCATACCACTG
TTAATCTTGAGGAACATGCG

Downstream 100 bases:

>100_bases
TCGCCACTAGCCTAAAGCCCGTGTAGCGTTAAACCTGAGTAGCGTTAAGGCTCAAGGTAATGGCTCATGTCTCGTCCTGA
AATAAGTTAACAAAAGCGGC

Product: chaperone protein TorD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSNVDINHARALVYQLLSSLFAREIDEQRLKQLTSEQAQQFWTQLGYAPEFSASVASIQKVLNGLTSDEALLELAADYCG
LFLVGTKHSASPYASLYLNREEEPLLFGQQHQQMSEFLHQSKLQVQSHFPEPADHLAVILAYMGHLACHSEDAAQLSFLN
ACIDSWLAKFVAKVVECDSKHSNGFYSALATLTLAWVQQDKQQLEQAMH

Sequences:

>Translated_209_residues
MSNVDINHARALVYQLLSSLFAREIDEQRLKQLTSEQAQQFWTQLGYAPEFSASVASIQKVLNGLTSDEALLELAADYCG
LFLVGTKHSASPYASLYLNREEEPLLFGQQHQQMSEFLHQSKLQVQSHFPEPADHLAVILAYMGHLACHSEDAAQLSFLN
ACIDSWLAKFVAKVVECDSKHSNGFYSALATLTLAWVQQDKQQLEQAMH
>Mature_208_residues
SNVDINHARALVYQLLSSLFAREIDEQRLKQLTSEQAQQFWTQLGYAPEFSASVASIQKVLNGLTSDEALLELAADYCGL
FLVGTKHSASPYASLYLNREEEPLLFGQQHQQMSEFLHQSKLQVQSHFPEPADHLAVILAYMGHLACHSEDAAQLSFLNA
CIDSWLAKFVAKVVECDSKHSNGFYSALATLTLAWVQQDKQQLEQAMH

Specific function: Involved in the biogenesis of torA. Acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. TorD subfamily

Homologues:

Organism=Escherichia coli, GI1787232, Length=202, Percent_Identity=36.1386138613861, Blast_Score=111, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TORD_SHESA (A0KU20)

Other databases:

- EMBL:   CP000469
- RefSeq:   YP_868695.1
- ProteinModelPortal:   A0KU20
- SMR:   A0KU20
- STRING:   A0KU20
- GeneID:   4476600
- GenomeReviews:   CP000469_GR
- KEGG:   shn:Shewana3_1054
- NMPDR:   fig|94122.5.peg.1177
- eggNOG:   COG3381
- HOGENOM:   HBG662677
- OMA:   NVDINHA
- PhylomeDB:   A0KU20
- ProtClustDB:   PRK04976
- BioCyc:   SSP94122:SHEWANA3_1054-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01150
- InterPro:   IPR023069
- InterPro:   IPR020945
- InterPro:   IPR009073
- Gene3D:   G3DSA:1.20.1280.20

Pfam domain/function: PF02613 Nitrate_red_del

EC number: NA

Molecular weight: Translated: 23430; Mature: 23298

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVDINHARALVYQLLSSLFAREIDEQRLKQLTSEQAQQFWTQLGYAPEFSASVASIQK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VLNGLTSDEALLELAADYCGLFLVGTKHSASPYASLYLNREEEPLLFGQQHQQMSEFLHQ
HHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHCCCCCCCCHHCHHHHHHHHHHHH
SKLQVQSHFPEPADHLAVILAYMGHLACHSEDAAQLSFLNACIDSWLAKFVAKVVECDSK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HSNGFYSALATLTLAWVQQDKQQLEQAMH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNVDINHARALVYQLLSSLFAREIDEQRLKQLTSEQAQQFWTQLGYAPEFSASVASIQK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VLNGLTSDEALLELAADYCGLFLVGTKHSASPYASLYLNREEEPLLFGQQHQQMSEFLHQ
HHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHCCCCCCCCHHCHHHHHHHHHHHH
SKLQVQSHFPEPADHLAVILAYMGHLACHSEDAAQLSFLNACIDSWLAKFVAKVVECDSK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HSNGFYSALATLTLAWVQQDKQQLEQAMH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA