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The map label for this gene is rimP [H]

Identifier: 117919477

GI number: 117919477

Start: 1200204

End: 1200659

Strand: Direct

Name: rimP [H]

Synonym: Shewana3_1028

Alternate gene names: 117919477

Gene position: 1200204-1200659 (Clockwise)

Preceding gene: 117919476

Following gene: 117919478

Centisome position: 24.14

GC content: 46.71

Gene sequence:

>456_bases
TTGGCAACATTAGAATCCAGACTGGCAGACATGCTCAAAGTGCCTGTGGAGGCATTAGGCTTCCAACTTTGGGGCATTGA
ATATGTACAAGCGGGTAAACATTCAATCCTGCGCGTGTTCATTGATGGTGAGAATGGTATCAATATCGAAGATTGTGCCA
ACGTAAGTCGCCAAGTCAGCGCTGTACTCGATGTTGAAGACCCTATTTCGACCGAATATACCTTAGAGGTTTCTTCACCC
GGTGTAGATAGACCGCTGTTCACTGCTGAACAATATGCGGCCTACGTCGGTGAGGATGTCAAGCTTCAACTGACTATGCC
TGTCGCGGGCAGTCGTAATTTAAAAGGCGCCATTACACAGGTTGACGGCCAAATGCTGTCACTCAATGTGAATGGTAAAG
AGCTGGTTGTCGCCTTGGATAATATCCGTAAAGGCAACATCATCGCTAAGTTTTGA

Upstream 100 bases:

>100_bases
ACGGGGTTTTTTGTTATCTGGGACTTTTAAATTTGTCGTATCCGATGCGACGTTTTACTAGGGCTATTAAGCCCTTTTTT
GTTTTTTCCGGGGGTCAATT

Downstream 100 bases:

>100_bases
TGGTTTCAAGGTGAACGAGGCAAGACGAAATGAATAAAGAGATTCTGCTAGTCGCTGAGGCGGTTTCAAATGAAAAAGCC
GTTCCACGCGAGAAAATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MATLESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENGINIEDCANVSRQVSAVLDVEDPISTEYTLEVSSP
GVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVDGQMLSLNVNGKELVVALDNIRKGNIIAKF

Sequences:

>Translated_151_residues
MATLESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENGINIEDCANVSRQVSAVLDVEDPISTEYTLEVSSP
GVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVDGQMLSLNVNGKELVVALDNIRKGNIIAKF
>Mature_150_residues
ATLESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENGINIEDCANVSRQVSAVLDVEDPISTEYTLEVSSPG
VDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVDGQMLSLNVNGKELVVALDNIRKGNIIAKF

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=151, Percent_Identity=58.2781456953642, Blast_Score=187, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 16423; Mature: 16292

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENGINIEDCANVSRQVS
CCCHHHHHHHHHHCCHHHHCEEEECCCEECCCCCEEEEEEEECCCCCCHHHHHCHHHHEE
AVLDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQ
EEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEE
VDGQMLSLNVNGKELVVALDNIRKGNIIAKF
ECCEEEEEECCCCEEEEEECCCCCCCEEEEC
>Mature Secondary Structure 
ATLESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENGINIEDCANVSRQVS
CCHHHHHHHHHHCCHHHHCEEEECCCEECCCCCEEEEEEEECCCCCCHHHHHCHHHHEE
AVLDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQ
EEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEE
VDGQMLSLNVNGKELVVALDNIRKGNIIAKF
ECCEEEEEECCCCEEEEEECCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA