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The map label for this gene is 117919429

Identifier: 117919429

GI number: 117919429

Start: 1150972

End: 1151883

Strand: Direct

Name: 117919429

Synonym: Shewana3_0980

Alternate gene names: NA

Gene position: 1150972-1151883 (Clockwise)

Preceding gene: 117919428

Following gene: 117919430

Centisome position: 23.15

GC content: 51.1

Gene sequence:

>912_bases
ATGCAATTAATGCGTTTTTGCCTTTCTCCCAATAAGTTGGCTTGGCTGCGCCAGGAATTAGGCGAACACGCCGACGAGCT
TATCGCGGCGATGGATAAAGCTGGGGGTAACTATCTAGCTGGATTAGCCGAGTCCCAAGCGGGGGACTTATCGGCAGCCG
ATTCGCAACTTAAGTTCCAATGGTTTCAGCAGAAGCTTGCCTTAACTACGCGATTAACTGATGCCGAGCTGGCAAACCTT
ACGCCACTGTCGCTGGTGGATATTAGGGGCGAAATACGGGAGGAGAGGCGGGTTGAAATGCATGTTGAATTAGTCACGCT
CGATAAGCTTGCCACCGCATTACAACAACTTAGCCGTGAATCCGTACTGGGGTTTGATACCGAAACGCGGGCAAGCTTTG
AGCCGGGCGTTCAACATCCCTTGAGCTTAGTGCAACTGGCGACCTCCGATACCTGCTATTTATTTCAGCAGGCGGTATTG
GGCGAGAGGCTCGCCGAGCTTAAACCTTTGCTCGAAAATGAGCAGATCCTCAAAGTGGGGATCGGATTAAGGGGCGATGG
CCAAGCACTGAAACGGGATTGGGATATTCAGGTCTCTCCACGACTTGATTTGAATTGGGCGATGGCGCAGCTTGGTGCTG
GGAAGGAAATGGGCACGCGTCAATTGGTGGCGGCATTACTGCATAAACGCATCGATAAACCTAAAAAAATTACCCTCTCG
AATTGGCAACAGGTGCCTTTATCCCAAGCGCAAGTTCAGTACGCCGCCCTCGATGCATTGGCGGCAACCCTGTGTTTTTG
GCAGTTAATCGACAAGCTGCAAGGTTTTTATGGCAAAACGACTGTTGGTAATAAACCCATATTGCCGCCGAGTTTAGCCG
CGCGACTCGCGAGCTATTTTCATCCGGCTTAA

Upstream 100 bases:

>100_bases
TTTTTCATCCTTTATTGCTGGCCATTATTGAGTCAGCTAACCCGAGTTGCGCGAGTACCAAGGTGCTCGCTGCGAGTATT
TCAGTGCTCAAGGACGAAGT

Downstream 100 bases:

>100_bases
GACTTGAGATAAGCTCGCGAAGATAAGGATTAGGGGAGCAAGAGATGTTGGATGCGATTTGTGTACTCACAACCGAGGCT
GCGGTAGAGCAGGCTTCGTC

Product: 3'-5' exonuclease

Products: NA

Alternate protein names: 3-5' Exonuclease Domain Protein; 3- 5' Exonuclease Domain Protein; Ribonuclease D; 3 Exoribonuclease Family Protein; Exonuclease

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MQLMRFCLSPNKLAWLRQELGEHADELIAAMDKAGGNYLAGLAESQAGDLSAADSQLKFQWFQQKLALTTRLTDAELANL
TPLSLVDIRGEIREERRVEMHVELVTLDKLATALQQLSRESVLGFDTETRASFEPGVQHPLSLVQLATSDTCYLFQQAVL
GERLAELKPLLENEQILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLS
NWQQVPLSQAQVQYAALDALAATLCFWQLIDKLQGFYGKTTVGNKPILPPSLAARLASYFHPA

Sequences:

>Translated_303_residues
MQLMRFCLSPNKLAWLRQELGEHADELIAAMDKAGGNYLAGLAESQAGDLSAADSQLKFQWFQQKLALTTRLTDAELANL
TPLSLVDIRGEIREERRVEMHVELVTLDKLATALQQLSRESVLGFDTETRASFEPGVQHPLSLVQLATSDTCYLFQQAVL
GERLAELKPLLENEQILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLS
NWQQVPLSQAQVQYAALDALAATLCFWQLIDKLQGFYGKTTVGNKPILPPSLAARLASYFHPA
>Mature_303_residues
MQLMRFCLSPNKLAWLRQELGEHADELIAAMDKAGGNYLAGLAESQAGDLSAADSQLKFQWFQQKLALTTRLTDAELANL
TPLSLVDIRGEIREERRVEMHVELVTLDKLATALQQLSRESVLGFDTETRASFEPGVQHPLSLVQLATSDTCYLFQQAVL
GERLAELKPLLENEQILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLS
NWQQVPLSQAQVQYAALDALAATLCFWQLIDKLQGFYGKTTVGNKPILPPSLAARLASYFHPA

Specific function: Unknown

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI110735439, Length=155, Percent_Identity=36.1290322580645, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI21356549, Length=200, Percent_Identity=30.5, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33626; Mature: 33626

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLMRFCLSPNKLAWLRQELGEHADELIAAMDKAGGNYLAGLAESQAGDLSAADSQLKFQ
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCHHHHHHHHH
WFQQKLALTTRLTDAELANLTPLSLVDIRGEIREERRVEMHVELVTLDKLATALQQLSRE
HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLGFDTETRASFEPGVQHPLSLVQLATSDTCYLFQQAVLGERLAELKPLLENEQILKVG
HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
IGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLS
CCCCCCCHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECC
NWQQVPLSQAQVQYAALDALAATLCFWQLIDKLQGFYGKTTVGNKPILPPSLAARLASYF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
HPA
CCC
>Mature Secondary Structure
MQLMRFCLSPNKLAWLRQELGEHADELIAAMDKAGGNYLAGLAESQAGDLSAADSQLKFQ
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCHHHHHHHHH
WFQQKLALTTRLTDAELANLTPLSLVDIRGEIREERRVEMHVELVTLDKLATALQQLSRE
HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLGFDTETRASFEPGVQHPLSLVQLATSDTCYLFQQAVLGERLAELKPLLENEQILKVG
HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
IGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVAALLHKRIDKPKKITLS
CCCCCCCHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECC
NWQQVPLSQAQVQYAALDALAATLCFWQLIDKLQGFYGKTTVGNKPILPPSLAARLASYF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
HPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA