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The map label for this gene is rpiA [H]

Identifier: 117919427

GI number: 117919427

Start: 1148971

End: 1149630

Strand: Reverse

Name: rpiA [H]

Synonym: Shewana3_0978

Alternate gene names: 117919427

Gene position: 1149630-1148971 (Counterclockwise)

Preceding gene: 117919434

Following gene: 117919425

Centisome position: 23.12

GC content: 49.55

Gene sequence:

>660_bases
ATGACTCAAGATGAAATGAAAAAAGCCGCTGGCTGGGCTGCTCTCAAATACGTTGAGAAAGACAGCATTGTGGGTGTAGG
CACAGGCTCAACCGTCAATCACTTTATCGATGCCCTCGCCACCATGAAGGCCGATATTGAAGGTGCGGTATCAAGCTCAG
AAGCCTCAACCCAAAAGATGAAAGCCCTTGGCATCCCAGTTTATGACTTAAACAGCGTCGATAAATTATCTGTGTATGTC
GATGGTGCCGATGAAATCAACGGCCATATGGACATGATCAAAGGCGGCGGCGCGGCATTAACCCGCGAGAAAATCGTTGC
GGCTGTGGCTGAAAAGTTTGTCTGTATCGTGGATAACACTAAACAAGTGGATATTTTGGGTAAATTCCCACTGCCCGTTG
AAGTGATCCCAATGGCGCGCTCTTACGTGGCCCGTGAACTGGTCAAACTCGGCGGCGACCCTGTGTACCGTGAAGGCGTT
GTCACGGATAACGGCAACGTGATCCTCGACGTTTACAACCTTAAGATCATCAATCCTAAGGAATTAGAAGAGAAGATCAA
CGCCATCGTCGGCGTAGTCACCAACGGCCTGTTCGCAAAACGCGGCGCCGATGTGTTATTGGTTGGCACCCCTGAAGGTG
TAAAAACCTTTACCGCTTAA

Upstream 100 bases:

>100_bases
CCAAGATCACAGCTACAGTGCAATAGCACCACACACTTTGATGGAAAAGAGTATACTAAGCCCAGAATTTTTTACTCATT
TGCCATTACAGGATGTCAAC

Downstream 100 bases:

>100_bases
GGCAAGGTGAGTCAAAAGACTCCCATGCGAGAAACAAAAATGCCGGTGCAGTTGCACCGGCATTTTTTATGACCCTAGGG
CTATTAAGCGATTACCACAC

Product: ribose-5-phosphate isomerase A

Products: NA

Alternate protein names: Phosphoriboisomerase A; PRI [H]

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTQDEMKKAAGWAALKYVEKDSIVGVGTGSTVNHFIDALATMKADIEGAVSSSEASTQKMKALGIPVYDLNSVDKLSVYV
DGADEINGHMDMIKGGGAALTREKIVAAVAEKFVCIVDNTKQVDILGKFPLPVEVIPMARSYVARELVKLGGDPVYREGV
VTDNGNVILDVYNLKIINPKELEEKINAIVGVVTNGLFAKRGADVLLVGTPEGVKTFTA

Sequences:

>Translated_219_residues
MTQDEMKKAAGWAALKYVEKDSIVGVGTGSTVNHFIDALATMKADIEGAVSSSEASTQKMKALGIPVYDLNSVDKLSVYV
DGADEINGHMDMIKGGGAALTREKIVAAVAEKFVCIVDNTKQVDILGKFPLPVEVIPMARSYVARELVKLGGDPVYREGV
VTDNGNVILDVYNLKIINPKELEEKINAIVGVVTNGLFAKRGADVLLVGTPEGVKTFTA
>Mature_218_residues
TQDEMKKAAGWAALKYVEKDSIVGVGTGSTVNHFIDALATMKADIEGAVSSSEASTQKMKALGIPVYDLNSVDKLSVYVD
GADEINGHMDMIKGGGAALTREKIVAAVAEKFVCIVDNTKQVDILGKFPLPVEVIPMARSYVARELVKLGGDPVYREGVV
TDNGNVILDVYNLKIINPKELEEKINAIVGVVTNGLFAKRGADVLLVGTPEGVKTFTA

Specific function: Nonoxidative branch of the pentose phosphate pathway. [C]

COG id: COG0120

COG function: function code G; Ribose 5-phosphate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribose 5-phosphate isomerase family [H]

Homologues:

Organism=Homo sapiens, GI94536842, Length=210, Percent_Identity=36.6666666666667, Blast_Score=108, Evalue=5e-24,
Organism=Escherichia coli, GI1789280, Length=217, Percent_Identity=76.036866359447, Blast_Score=341, Evalue=2e-95,
Organism=Caenorhabditis elegans, GI17551758, Length=210, Percent_Identity=35.7142857142857, Blast_Score=110, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6324669, Length=225, Percent_Identity=30.6666666666667, Blast_Score=82, Evalue=6e-17,
Organism=Drosophila melanogaster, GI281364072, Length=205, Percent_Identity=34.1463414634146, Blast_Score=88, Evalue=5e-18,

Paralogues:

None

Copy number: 740 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004788
- InterPro:   IPR020672 [H]

Pfam domain/function: PF06026 Rib_5-P_isom_A [H]

EC number: =5.3.1.6 [H]

Molecular weight: Translated: 23312; Mature: 23181

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQDEMKKAAGWAALKYVEKDSIVGVGTGSTVNHFIDALATMKADIEGAVSSSEASTQKM
CCHHHHHHHHHHHHHEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KALGIPVYDLNSVDKLSVYVDGADEINGHMDMIKGGGAALTREKIVAAVAEKFVCIVDNT
HHHCCCEEECCCCCEEEEEECCHHHCCCCEEEECCCCCHHHHHHHHHHHHHCEEEEECCC
KQVDILGKFPLPVEVIPMARSYVARELVKLGGDPVYREGVVTDNGNVILDVYNLKIINPK
EEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEEEEEEECHH
ELEEKINAIVGVVTNGLFAKRGADVLLVGTPEGVKTFTA
HHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCEECCC
>Mature Secondary Structure 
TQDEMKKAAGWAALKYVEKDSIVGVGTGSTVNHFIDALATMKADIEGAVSSSEASTQKM
CHHHHHHHHHHHHHEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KALGIPVYDLNSVDKLSVYVDGADEINGHMDMIKGGGAALTREKIVAAVAEKFVCIVDNT
HHHCCCEEECCCCCEEEEEECCHHHCCCCEEEECCCCCHHHHHHHHHHHHHCEEEEECCC
KQVDILGKFPLPVEVIPMARSYVARELVKLGGDPVYREGVVTDNGNVILDVYNLKIINPK
EEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEEEEEEECHH
ELEEKINAIVGVVTNGLFAKRGADVLLVGTPEGVKTFTA
HHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA