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The map label for this gene is ybaK [H]

Identifier: 117919406

GI number: 117919406

Start: 1122400

End: 1122876

Strand: Reverse

Name: ybaK [H]

Synonym: Shewana3_0957

Alternate gene names: 117919406

Gene position: 1122876-1122400 (Counterclockwise)

Preceding gene: 117919407

Following gene: 117919405

Centisome position: 22.58

GC content: 50.73

Gene sequence:

>477_bases
ATGACACCAGCCGTACAAATGGCAAAGAAAGCCAAAATTCCCTTTGAAATCTTAGAATACAGTCACGACCCACACTGCGC
CGCCTACGGCGAAGAAGCCGCCAATGTGTTAGGGCTCGCCCCCGCGCAGGTATTTAAAACCTTACTGGTCGCGACCGATA
AAGCCCATCCGCCGCTTGCTGTTGCGCTCGTTCCAGTTGATCATCAACTCAATTTAAAAGCCGTCGCTAAATGTTTAGGC
CTGAAGAAACTGCAAATGGCCGATGCGGATTTAGCGCAAAAATCCTCTGGCTACCTCGTTGGCGGCATTAGCCCCCTAGC
TCAGAAAAAACAGCTGCCAACGCTGATCGATGCGACGGCTCAGCAATTCGATAAAATCTATGTCAGTGCCGGCCGCCGCG
GCCTTGAAATCTGCCTTGCGGCGAATGACTTAGCGAAATTATGCCGCGGATCATTTGCGGATATTAAAACCCTTTAA

Upstream 100 bases:

>100_bases
GCCCGAGCTAACATTTTAACGCCGCAGAAAGGGCTACTATGGCGGACTTTTATTGCCCCTAGACTTTTATTGCACCTAAT
TGGGGCGCGAGGACGAGAGC

Downstream 100 bases:

>100_bases
GGCAAAACATCAGATATTGCTAAAATATGCTGAGAGCGTCACAGCATTTATCCTCAACAGAGTTGAAAACTGCAGCATAT
CCGTCTATAAATTGAACTGT

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTPAVQMAKKAKIPFEILEYSHDPHCAAYGEEAANVLGLAPAQVFKTLLVATDKAHPPLAVALVPVDHQLNLKAVAKCLG
LKKLQMADADLAQKSSGYLVGGISPLAQKKQLPTLIDATAQQFDKIYVSAGRRGLEICLAANDLAKLCRGSFADIKTL

Sequences:

>Translated_158_residues
MTPAVQMAKKAKIPFEILEYSHDPHCAAYGEEAANVLGLAPAQVFKTLLVATDKAHPPLAVALVPVDHQLNLKAVAKCLG
LKKLQMADADLAQKSSGYLVGGISPLAQKKQLPTLIDATAQQFDKIYVSAGRRGLEICLAANDLAKLCRGSFADIKTL
>Mature_157_residues
TPAVQMAKKAKIPFEILEYSHDPHCAAYGEEAANVLGLAPAQVFKTLLVATDKAHPPLAVALVPVDHQLNLKAVAKCLGL
KKLQMADADLAQKSSGYLVGGISPLAQKKQLPTLIDATAQQFDKIYVSAGRRGLEICLAANDLAKLCRGSFADIKTL

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=60, Blast_Score=180, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16820; Mature: 16689

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAVQMAKKAKIPFEILEYSHDPHCAAYGEEAANVLGLAPAQVFKTLLVATDKAHPPLA
CCCHHHHHHHCCCCHHHHHCCCCCCCHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCEE
VALVPVDHQLNLKAVAKCLGLKKLQMADADLAQKSSGYLVGGISPLAQKKQLPTLIDATA
EEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCHHHHHHH
QQFDKIYVSAGRRGLEICLAANDLAKLCRGSFADIKTL
HHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCHHCCC
>Mature Secondary Structure 
TPAVQMAKKAKIPFEILEYSHDPHCAAYGEEAANVLGLAPAQVFKTLLVATDKAHPPLA
CCHHHHHHHCCCCHHHHHCCCCCCCHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCEE
VALVPVDHQLNLKAVAKCLGLKKLQMADADLAQKSSGYLVGGISPLAQKKQLPTLIDATA
EEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCHHHHHHH
QQFDKIYVSAGRRGLEICLAANDLAKLCRGSFADIKTL
HHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]