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The map label for this gene is siaP [H]

Identifier: 117919384

GI number: 117919384

Start: 1094748

End: 1095860

Strand: Direct

Name: siaP [H]

Synonym: Shewana3_0935

Alternate gene names: 117919384

Gene position: 1094748-1095860 (Clockwise)

Preceding gene: 117919383

Following gene: 117919385

Centisome position: 22.02

GC content: 52.02

Gene sequence:

>1113_bases
ATGCGTCATTTGGGGTGCCTAATCTTTGCGGTATTGCTTATTGGTCTCGGAGGGTGTAATCCCGCGCCCCAGCATATCGA
GCAGACTGCAGCACCTCATCCCGATGCGACTCCCGTTAAAGATGTTATCGAGTGGCGTTTAGCCACGTCTTGGCCGAAAA
ACTTTGCTGGTTTAGGTATGGCACCTGAGCGTTTTGCCAAGCTGGTGAACGAGATGTCCCATGGCCGCTTGCAAATTCAT
GTGTATGGCGCGGGAGAATTAATGCCCGCCTTTGCGGTGTTCGACGGGGTAAGCCAAGGTAAAATCCAAATGGCCCACGC
CGCCTCCTATTATTGGAAGGGGAAAGCGCCCGCCTCACAGTTTTTTTCTTCTATCCCCTTTGGTATGACGGCCCAAGAGA
TGAACGGCTGGCTGCATTATGGTGGCGGCATGGCATTGTGGGAGGAGGTCTATCGCCCCTTTGGCATCATTCCATTAGCG
GGTGGCAATACGGGGATGCAGATGGGCGGCTGGTTTAATAAACCTATTAATAGCATTGCCGATTTTAAAGGCTTGAAGAT
CCGTATGCCGGGCTTGGGGGGCGAAGTGCTAAAACGCGTTGGTGCCGTACCCGTCAATATGGCGGGCAGGGAGCTTTATG
GCGCTTTGCAAACGGGGTCTATCGATGCGGCTGAGTGGGTTGGGCCTGTCAATGACCTCGCTTTTGGTTTACATAAAGTC
GCCAAATATTACTATTACCCCGGTTGGCACGAGCCTGGCTCCAATATGGAGTTTTTGATTAATAAGGGTGCGTTCGAGAG
TCTTCCCCAAGATTTACAAGCCATAGTCAAAACGGCTGCACGCGCCATCAATCAAGATATGTTGGACGAATACACCACGC
GTAACGTGACTGCGCTTGACACCTTAGTCAAAGATGAAGGTGTGGTGCTTAAGGCTTTTCCGCCCCAGGTGCTCACCGAG
CTTGAACGTATTTCACAGCAGGTCATTGAAGAGCAGGCCGAGCAGGATCCTATGATGCGCAAAGTGTATCGCGCTTACCA
TGCCTATGAGCAGGGGGGGCGTGAGTATCATAAGATTTCAGAGGATGCTTACAGCCAGCAGCGCCAGCACTAA

Upstream 100 bases:

>100_bases
AAGTAGTAAGCATCTAAACAAGAGTGCTTTAGAGCAGTCGATACTTAAGAGCGCTAATTTTCATACTGTTAACTAACTTC
GCATTCAGGGAGAGTGTTCG

Downstream 100 bases:

>100_bases
TGCCGATAATTTGAACAAAATGTTCATATTAGCGTCTGATTAATGTGAGATGATTTCATCTTACATTATCTTGTTATCGA
CCTAATCCATTTGGTGTTAT

Product: TRAP dicarboxylate transporter- DctP subunit

Products: NA

Alternate protein names: Extracytoplasmic solute receptor protein siaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MRHLGCLIFAVLLIGLGGCNPAPQHIEQTAAPHPDATPVKDVIEWRLATSWPKNFAGLGMAPERFAKLVNEMSHGRLQIH
VYGAGELMPAFAVFDGVSQGKIQMAHAASYYWKGKAPASQFFSSIPFGMTAQEMNGWLHYGGGMALWEEVYRPFGIIPLA
GGNTGMQMGGWFNKPINSIADFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELYGALQTGSIDAAEWVGPVNDLAFGLHKV
AKYYYYPGWHEPGSNMEFLINKGAFESLPQDLQAIVKTAARAINQDMLDEYTTRNVTALDTLVKDEGVVLKAFPPQVLTE
LERISQQVIEEQAEQDPMMRKVYRAYHAYEQGGREYHKISEDAYSQQRQH

Sequences:

>Translated_370_residues
MRHLGCLIFAVLLIGLGGCNPAPQHIEQTAAPHPDATPVKDVIEWRLATSWPKNFAGLGMAPERFAKLVNEMSHGRLQIH
VYGAGELMPAFAVFDGVSQGKIQMAHAASYYWKGKAPASQFFSSIPFGMTAQEMNGWLHYGGGMALWEEVYRPFGIIPLA
GGNTGMQMGGWFNKPINSIADFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELYGALQTGSIDAAEWVGPVNDLAFGLHKV
AKYYYYPGWHEPGSNMEFLINKGAFESLPQDLQAIVKTAARAINQDMLDEYTTRNVTALDTLVKDEGVVLKAFPPQVLTE
LERISQQVIEEQAEQDPMMRKVYRAYHAYEQGGREYHKISEDAYSQQRQH
>Mature_370_residues
MRHLGCLIFAVLLIGLGGCNPAPQHIEQTAAPHPDATPVKDVIEWRLATSWPKNFAGLGMAPERFAKLVNEMSHGRLQIH
VYGAGELMPAFAVFDGVSQGKIQMAHAASYYWKGKAPASQFFSSIPFGMTAQEMNGWLHYGGGMALWEEVYRPFGIIPLA
GGNTGMQMGGWFNKPINSIADFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELYGALQTGSIDAAEWVGPVNDLAFGLHKV
AKYYYYPGWHEPGSNMEFLINKGAFESLPQDLQAIVKTAARAINQDMLDEYTTRNVTALDTLVKDEGVVLKAFPPQVLTE
LERISQQVIEEQAEQDPMMRKVYRAYHAYEQGGREYHKISEDAYSQQRQH

Specific function: Part of the tripartite ATP-independent periplasmic (TRAP) transport system siaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid [H]

COG id: COG4663

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 7 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018389
- InterPro:   IPR004682 [H]

Pfam domain/function: PF03480 SBP_bac_7 [H]

EC number: NA

Molecular weight: Translated: 40974; Mature: 40974

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHLGCLIFAVLLIGLGGCNPAPQHIEQTAAPHPDATPVKDVIEWRLATSWPKNFAGLGM
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
APERFAKLVNEMSHGRLQIHVYGAGELMPAFAVFDGVSQGKIQMAHAASYYWKGKAPASQ
CHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHCCCCCCCEEHHHHHHHEECCCCCHHH
FFSSIPFGMTAQEMNGWLHYGGGMALWEEVYRPFGIIPLAGGNTGMQMGGWFNKPINSIA
HHHHCCCCCCHHHHCCEEEECCCHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHH
DFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELYGALQTGSIDAAEWVGPVNDLAFGLHKV
HCCCCEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHH
AKYYYYPGWHEPGSNMEFLINKGAFESLPQDLQAIVKTAARAINQDMLDEYTTRNVTALD
HHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TLVKDEGVVLKAFPPQVLTELERISQQVIEEQAEQDPMMRKVYRAYHAYEQGGREYHKIS
HHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHH
EDAYSQQRQH
HHHHHHHCCC
>Mature Secondary Structure
MRHLGCLIFAVLLIGLGGCNPAPQHIEQTAAPHPDATPVKDVIEWRLATSWPKNFAGLGM
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
APERFAKLVNEMSHGRLQIHVYGAGELMPAFAVFDGVSQGKIQMAHAASYYWKGKAPASQ
CHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHCCCCCCCEEHHHHHHHEECCCCCHHH
FFSSIPFGMTAQEMNGWLHYGGGMALWEEVYRPFGIIPLAGGNTGMQMGGWFNKPINSIA
HHHHCCCCCCHHHHCCEEEECCCHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHH
DFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELYGALQTGSIDAAEWVGPVNDLAFGLHKV
HCCCCEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHH
AKYYYYPGWHEPGSNMEFLINKGAFESLPQDLQAIVKTAARAINQDMLDEYTTRNVTALD
HHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TLVKDEGVVLKAFPPQVLTELERISQQVIEEQAEQDPMMRKVYRAYHAYEQGGREYHKIS
HHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHH
EDAYSQQRQH
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA