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The map label for this gene is hlyB [H]

Identifier: 117919347

GI number: 117919347

Start: 1042753

End: 1044645

Strand: Reverse

Name: hlyB [H]

Synonym: Shewana3_0895

Alternate gene names: 117919347

Gene position: 1044645-1042753 (Counterclockwise)

Preceding gene: 117919348

Following gene: 117919345

Centisome position: 21.01

GC content: 49.97

Gene sequence:

>1893_bases
ATGAGATCAACACTCAAAACCCGCTTACTCTTTAGTAGTCTCTTCGCCGTTCTCATTACTGTCGCAGTGCTGGTAAGCAT
TTCAAGTTACTTCATTAGAAATAATGCCTTAGAAAATACTCAACATGAAATTGATCAACTGGCGAACACCTTTGCCGAAG
GTATTGGCCTGTGGATGCAAGATAGAAAAATGGCCATCACTAGTCTTAAAAAGACCATAGAGGCCGATCCCAGTGTGCAG
ATCACCCCCTATTTATTACAAGCCCATAATGGTATGGGATTCGCGCTGACCTATTTTGGAGATGAACAAGGCAACATGTA
TCGCCAAGATCCTGCGCTTAACGTCGCTAACTATGACCCCAGAATTCGTCCTTGGTATATGGATGCCAAAGCCGCCAATG
CCATTGTGATGACCGCGCCCTATGTCAGCGCCACCTTAAAAAAACAAGTAGTGACCATTGCAGAACCTGTGACTGTCTCT
GGTAGTTTGTTCGGGGTTGCCGCAGCTAACCTCACCATAGACCAACTCACAGATGCGGTGCAGCGCCTTCAAGTGCCAGG
CAAAGGCTACACCATCATGGTGGACAAGACAGGGCTTATCATTAGCCATCCTAAAAGCCAGCTCAATAACGAACAACTCA
ATAAAATCGATAACAGTTTTACCCCGAGCTGGTTATCTCAACGTGCCAACGCCAATACCTTAGAAGAGCGCGAACTCGAT
GGCGAGACCCAACTTATTTATGTTGCGGCTGTACCATCCACCGATTGGGAATTAGTTTTCGTAATGAATAAAGACGAAAT
CATGTCGCAGGCCACCACACTCGCCTGGTGGATGTCCGCCGTCGGTGCTGGCTTACTGGTGATTTTCGGCTTAGTCCTAG
TCGCCATCTTCAAGATCCAATTTAAAGACTTAGAACGCGTTGCCTTGGCACTCAATGATATTGCCGAAGGGGATGGTGAC
CTGACGGTGAGAATTCACACCGCCAACAGCCACGACGAGATTGGCATCTTAGCTTCGGGCTTTAACCGCTTCGTCGAGCG
TCTACACGGCATGATCTCAAGAATGCACAAGATTGCGGGCCAACTGGAATATCAAGCCCAAGGCAGTAGCGCCTCGGCCA
CAGATAATAGCCAGCGCATCGCCGTGCAGCAGGACGAAGTGACTATGGTTGCCACCGCAGTGACTGAAATGGCGAGCGCC
ACCGAAGAGATTGCCAGCAATGCCGAACACACAGCGCAAACGGCGCAGGATGCGGTAGGGTTGTCGAACCACGGCCAAAA
ACAAGTGATGCAAAGTCAGCAATCAATCCGCAACTTAGCCAATGAGGTCGAAACTGCGGGTCGTATTATCAGCGAGTTGA
ACGAACACTCGCAGAAAATTAATAGCATCCTGCTCACCATCAGTGGCATTGCCGAACAAACCAACTTACTGGCGCTGAAC
GCCGCCATTGAAGCCGCCCGCGCTGGTGAACAAGGTCGCGGCTTTGCTGTGGTGGCTGACGAGGTGCGCGTGTTGTCGCA
GCGTACTCACTCCTCGACCCAAGAAATTCAAGCCATGATCGAAACCCTACAACAAACTGCGGGTAAGGCGGTTAAATCTA
TGACTCAAAGTCATGATATGGCTGAAACCAGTGTCGCCGACGCTAATTCGGCCAGTGAGAGCCTGCTACAGATCAGCAAA
GCCATTAATGAGATCTCGGATATGGCGAGCCAAATTGCCACGGCCGCAGAGGAGCAAACCTCGGTCACCAGCGAAATTAA
CCGTAATACCGAATCGATTCGTGAGGTCTCTGAAAATCTCTCTATCGAAGCACAAAGCTCTATGGTTCAGGCGCAGGAAT
TGGCTCACTTAGCCGCCTCGCTGCAACAGGAAGTCGGCCGCTTTAAGCTATAA

Upstream 100 bases:

>100_bases
ACCGTCATAAAAAGAGTGACTTATCTATTCATGCTTTCACACTTTCAGCCGCTATACTCTATTAACGTTAGACAGCTAAC
GGAATTTAAAGGAATTACAT

Downstream 100 bases:

>100_bases
ATGCACCAACGGCTTATGCCGTAACGCATAGCAACGCTATAAAAATCCCCGATAATCTTAAACTTATCGGGGATTTTTAT
TTATGCTAAAACTATCTCTT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MRSTLKTRLLFSSLFAVLITVAVLVSISSYFIRNNALENTQHEIDQLANTFAEGIGLWMQDRKMAITSLKKTIEADPSVQ
ITPYLLQAHNGMGFALTYFGDEQGNMYRQDPALNVANYDPRIRPWYMDAKAANAIVMTAPYVSATLKKQVVTIAEPVTVS
GSLFGVAAANLTIDQLTDAVQRLQVPGKGYTIMVDKTGLIISHPKSQLNNEQLNKIDNSFTPSWLSQRANANTLEERELD
GETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKIQFKDLERVALALNDIAEGDGD
LTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASA
TEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALN
AAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISK
AINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSSMVQAQELAHLAASLQQEVGRFKL

Sequences:

>Translated_630_residues
MRSTLKTRLLFSSLFAVLITVAVLVSISSYFIRNNALENTQHEIDQLANTFAEGIGLWMQDRKMAITSLKKTIEADPSVQ
ITPYLLQAHNGMGFALTYFGDEQGNMYRQDPALNVANYDPRIRPWYMDAKAANAIVMTAPYVSATLKKQVVTIAEPVTVS
GSLFGVAAANLTIDQLTDAVQRLQVPGKGYTIMVDKTGLIISHPKSQLNNEQLNKIDNSFTPSWLSQRANANTLEERELD
GETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKIQFKDLERVALALNDIAEGDGD
LTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASA
TEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALN
AAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISK
AINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSSMVQAQELAHLAASLQQEVGRFKL
>Mature_630_residues
MRSTLKTRLLFSSLFAVLITVAVLVSISSYFIRNNALENTQHEIDQLANTFAEGIGLWMQDRKMAITSLKKTIEADPSVQ
ITPYLLQAHNGMGFALTYFGDEQGNMYRQDPALNVANYDPRIRPWYMDAKAANAIVMTAPYVSATLKKQVVTIAEPVTVS
GSLFGVAAANLTIDQLTDAVQRLQVPGKGYTIMVDKTGLIISHPKSQLNNEQLNKIDNSFTPSWLSQRANANTLEERELD
GETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKIQFKDLERVALALNDIAEGDGD
LTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASA
TEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALN
AAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISK
AINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSSMVQAQELAHLAASLQQEVGRFKL

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=310, Percent_Identity=32.258064516129, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788195, Length=304, Percent_Identity=29.9342105263158, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1787690, Length=333, Percent_Identity=32.7327327327327, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788194, Length=357, Percent_Identity=26.890756302521, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1789453, Length=328, Percent_Identity=27.7439024390244, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 68585; Mature: 68585

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS50192 T_SNARE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTLKTRLLFSSLFAVLITVAVLVSISSYFIRNNALENTQHEIDQLANTFAEGIGLWMQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
DRKMAITSLKKTIEADPSVQITPYLLQAHNGMGFALTYFGDEQGNMYRQDPALNVANYDP
HHHHHHHHHHHHHCCCCCCEEEHHHEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
RIRPWYMDAKAANAIVMTAPYVSATLKKQVVTIAEPVTVSGSLFGVAAANLTIDQLTDAV
CCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCCEECCCCHHHHHHCCCHHHHHHHH
QRLQVPGKGYTIMVDKTGLIISHPKSQLNNEQLNKIDNSFTPSWLSQRANANTLEERELD
HHHCCCCCCEEEEEECCCEEEECCHHHCCHHHHHHHCCCCCHHHHHHCCCCCCCHHHCCC
GETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKIQ
CCCEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIAG
HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDAVG
CEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
LSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH
AAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDM
HHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
SIEAQSSMVQAQELAHLAASLQQEVGRFKL
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRSTLKTRLLFSSLFAVLITVAVLVSISSYFIRNNALENTQHEIDQLANTFAEGIGLWMQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
DRKMAITSLKKTIEADPSVQITPYLLQAHNGMGFALTYFGDEQGNMYRQDPALNVANYDP
HHHHHHHHHHHHHCCCCCCEEEHHHEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
RIRPWYMDAKAANAIVMTAPYVSATLKKQVVTIAEPVTVSGSLFGVAAANLTIDQLTDAV
CCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCCEECCCCHHHHHHCCCHHHHHHHH
QRLQVPGKGYTIMVDKTGLIISHPKSQLNNEQLNKIDNSFTPSWLSQRANANTLEERELD
HHHCCCCCCEEEEEECCCEEEECCHHHCCHHHHHHHCCCCCHHHHHHCCCCCCCHHHCCC
GETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKIQ
CCCEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIAG
HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDAVG
CEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
LSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH
AAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDM
HHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
SIEAQSSMVQAQELAHLAASLQQEVGRFKL
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]