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The map label for this gene is yddU [C]

Identifier: 117919320

GI number: 117919320

Start: 1012082

End: 1014313

Strand: Reverse

Name: yddU [C]

Synonym: Shewana3_0868

Alternate gene names: 117919320

Gene position: 1014313-1012082 (Counterclockwise)

Preceding gene: 117919321

Following gene: 117919319

Centisome position: 20.4

GC content: 48.43

Gene sequence:

>2232_bases
ATGGTTAGTCAATCGCAAGAAATTGTTTTTTTAGATGAGCCCATAGCAAGCACAGCGGTAAAGGCTGCTAAAGCAGTCAA
AATACTCACAGTTGATGATGATATTAACTTCCAACGCTCTACCGCATTTGCACTGTCTACCCTGACCATTCTTGGCTCAA
AAATAGAATTAACCCAAGCATTTAGCTACGCAGAAGCCTGCCAAATCGTCGCCAATGAAGACGATTTTGCCATTGCCTTA
GTCGATGTGGTGATGGAGACCGAAGACGCAGGGCTGAGATTAGTTCGCGGCATTCGAGAAGTCCTCGGCAACGAGAAAAT
TCGCATTATTCTGCTCACCGGACAACCCGGCATGGCACCAGTTTTTAACGTGATGCGCGACTATGATATCAACGATTATT
GGACTAAGTCGGAACTCTCCGCCGACCGCCTACAAACCATACTGACCACCAACCTGCGCTCATATCAACAGATCAGCAAT
ATCGCCAACGCAAAACGCGGGCTGCAATTAATCGCCGAGTCCAGCGGCGCCCTCTATACCTCGCGCAATATCAAAGAACT
CTCGAGCAAGATGCTACAGCAACTGGCCATACTGCTGAATTTGCCTTCAGGCGGGATTGTCTGTGTCAAAGCCATTAATG
ATCTCAGCGAGTTTGGTCATATACATCAGATCATTGGTGCCTCAGGGGAATTTGAGTCTTACTATGGCAAAGCCTTGCAA
GAGCTCGAGCAGCAACATATTCGCATCCAGCTCGAATTATCGCTCAGCAGTAAACAATCACGCATCGAGCCACAATACAC
TTGTCTGTTTTTCCCCGGCGAGCTGGCTGGCAATGACTATGCGGTTTACCTCGCCACGGGGCGACTCTTAGATGCGACCG
AAACCGAGCTAATTCGCGTCTTTAGCATGAATATTTGCGGCGGCTTACACAGTGTCTCCTTGATGAGTCAATTGGATAAG
ATCGCCTTCGAAGATCCTTTACTTAAGATCCCGAATCGCAATGTACTCATTCGCACACTCGATGGCATTTTAAAGGAAGA
TGTTCGCGATAAATTTAATCTATTACTCATTGATATTGATAAGTTTTCAGACTTTAACCATGTGTTTGGCTCTGAGCATG
GCAACGATATGCTCAAGCATGTGGCCAATAGTCTGAGGGAGCAGTTCGATGCGAGCGTGCTCGTCAGCCGCTTAAAGGAT
GATAAGTTCGCCATTTTAGGCCCGAAGCACTTAGTCACCGCCGCACTGATTGAGCAGCTGTTTGTCGCCCCCTATCAACA
GGGTACCTCCTGCATTACCGTCAATATCAGCACTGTGACTCTCCCCCTTGAGCTCGCCGAAGGGGATGCGGTCGCCGCCA
TCACTCAGCTGAATATGGCGCTCAAAAAGGCCAAGAGTCTGGGCATTCGTCAGCATGTGACCTATCAGCCCAACAACGAT
GATGTGACGTCACATTTTGAATTACTACAGGCACTGCAGTTAGGCATTACCCAAGGGGATATTCATATTGCTCTGCAGCC
ACAGGTGTCGTTACAAACGGGAGAAGTCGTTGGGGTCGAAGCGCTGGCGCGCTGGACTTTACCCAATGGTGATAAGGTGC
CGCCCCTACGTTTTATCCCCATCGCCGAAGCGACGGGGCTGATCACTCAGTTGGGGGAACAACTGTTTGTGCAATCATGC
CAAGCCATGCATGCTCTCGCCGAGGCGGGTTATCAAAACTTACGTATTGGCGTTAACCTCTCCGCAATGCAATTTGAGCA
GGAAAAAATCGTTAATCAACTGCATAGCCATATTGAGGCCGCGCAGATTGCCAGCAAACATATCGAAATCGAAGTCACAG
AATCCATTGCCATGCAGAATTTTGAGGTGATCAACAAACAGCTTAAGGCACTGCGCAATATGAATATCAAGGTCGCGATC
GATGACTTTGGTACTGGGTTTTCTTCCCTTGCCTACCTTAGCAAGCTGACCTTTGACAGGATTAAGATTGATAAATCCTT
TATCGATAATATCACCACCGACGATGGCGCCGCGGCGATTGTCGACAGCATTATTCTCCTCGGTGAACGCTTCAAGATGA
ATGTGATTGCCGAAGGCGTTGAAACCCGCGAGCAAGCCCGCTGGCTTAAAGACCGCGGCTGCCATGATGCCCAAGGCTAT
TTTTACGCTAAACCAATGCCGCTCCAAGAGTTATTAGTGTGGCTCGCCAATTATCAAAAAAGCATTCTGTGA

Upstream 100 bases:

>100_bases
CTTGAATAAAGCCTAGCTGTCGCAAATACTTTGAGTATAAAAATTGCTCACTTCTAGGCTGAGTTAATAAGGATGCTTAG
GCATCTCAAGGAAAGAGAAT

Downstream 100 bases:

>100_bases
TGATATTGAAACGCGCGATAACCTCCCAGCAGTTATTTTGGCGATATTGGCTTAAGCTGATGTTACCTTGGCTGTTATTG
GTGCCGCTGCTCAGCTTGGT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 743; Mature: 743

Protein sequence:

>743_residues
MVSQSQEIVFLDEPIASTAVKAAKAVKILTVDDDINFQRSTAFALSTLTILGSKIELTQAFSYAEACQIVANEDDFAIAL
VDVVMETEDAGLRLVRGIREVLGNEKIRIILLTGQPGMAPVFNVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISN
IANAKRGLQLIAESSGALYTSRNIKELSSKMLQQLAILLNLPSGGIVCVKAINDLSEFGHIHQIIGASGEFESYYGKALQ
ELEQQHIRIQLELSLSSKQSRIEPQYTCLFFPGELAGNDYAVYLATGRLLDATETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLLKIPNRNVLIRTLDGILKEDVRDKFNLLLIDIDKFSDFNHVFGSEHGNDMLKHVANSLREQFDASVLVSRLKD
DKFAILGPKHLVTAALIEQLFVAPYQQGTSCITVNISTVTLPLELAEGDAVAAITQLNMALKKAKSLGIRQHVTYQPNND
DVTSHFELLQALQLGITQGDIHIALQPQVSLQTGEVVGVEALARWTLPNGDKVPPLRFIPIAEATGLITQLGEQLFVQSC
QAMHALAEAGYQNLRIGVNLSAMQFEQEKIVNQLHSHIEAAQIASKHIEIEVTESIAMQNFEVINKQLKALRNMNIKVAI
DDFGTGFSSLAYLSKLTFDRIKIDKSFIDNITTDDGAAAIVDSIILLGERFKMNVIAEGVETREQARWLKDRGCHDAQGY
FYAKPMPLQELLVWLANYQKSIL

Sequences:

>Translated_743_residues
MVSQSQEIVFLDEPIASTAVKAAKAVKILTVDDDINFQRSTAFALSTLTILGSKIELTQAFSYAEACQIVANEDDFAIAL
VDVVMETEDAGLRLVRGIREVLGNEKIRIILLTGQPGMAPVFNVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISN
IANAKRGLQLIAESSGALYTSRNIKELSSKMLQQLAILLNLPSGGIVCVKAINDLSEFGHIHQIIGASGEFESYYGKALQ
ELEQQHIRIQLELSLSSKQSRIEPQYTCLFFPGELAGNDYAVYLATGRLLDATETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLLKIPNRNVLIRTLDGILKEDVRDKFNLLLIDIDKFSDFNHVFGSEHGNDMLKHVANSLREQFDASVLVSRLKD
DKFAILGPKHLVTAALIEQLFVAPYQQGTSCITVNISTVTLPLELAEGDAVAAITQLNMALKKAKSLGIRQHVTYQPNND
DVTSHFELLQALQLGITQGDIHIALQPQVSLQTGEVVGVEALARWTLPNGDKVPPLRFIPIAEATGLITQLGEQLFVQSC
QAMHALAEAGYQNLRIGVNLSAMQFEQEKIVNQLHSHIEAAQIASKHIEIEVTESIAMQNFEVINKQLKALRNMNIKVAI
DDFGTGFSSLAYLSKLTFDRIKIDKSFIDNITTDDGAAAIVDSIILLGERFKMNVIAEGVETREQARWLKDRGCHDAQGY
FYAKPMPLQELLVWLANYQKSIL
>Mature_743_residues
MVSQSQEIVFLDEPIASTAVKAAKAVKILTVDDDINFQRSTAFALSTLTILGSKIELTQAFSYAEACQIVANEDDFAIAL
VDVVMETEDAGLRLVRGIREVLGNEKIRIILLTGQPGMAPVFNVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISN
IANAKRGLQLIAESSGALYTSRNIKELSSKMLQQLAILLNLPSGGIVCVKAINDLSEFGHIHQIIGASGEFESYYGKALQ
ELEQQHIRIQLELSLSSKQSRIEPQYTCLFFPGELAGNDYAVYLATGRLLDATETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLLKIPNRNVLIRTLDGILKEDVRDKFNLLLIDIDKFSDFNHVFGSEHGNDMLKHVANSLREQFDASVLVSRLKD
DKFAILGPKHLVTAALIEQLFVAPYQQGTSCITVNISTVTLPLELAEGDAVAAITQLNMALKKAKSLGIRQHVTYQPNND
DVTSHFELLQALQLGITQGDIHIALQPQVSLQTGEVVGVEALARWTLPNGDKVPPLRFIPIAEATGLITQLGEQLFVQSC
QAMHALAEAGYQNLRIGVNLSAMQFEQEKIVNQLHSHIEAAQIASKHIEIEVTESIAMQNFEVINKQLKALRNMNIKVAI
DDFGTGFSSLAYLSKLTFDRIKIDKSFIDNITTDDGAAAIVDSIILLGERFKMNVIAEGVETREQARWLKDRGCHDAQGY
FYAKPMPLQELLVWLANYQKSIL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=424, Percent_Identity=31.8396226415094, Blast_Score=211, Evalue=9e-56,
Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=28.4403669724771, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=35.6, Blast_Score=162, Evalue=7e-41,
Organism=Escherichia coli, GI1788502, Length=241, Percent_Identity=33.195020746888, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=33.739837398374, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=34.156378600823, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI1786507, Length=256, Percent_Identity=33.984375, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=34.9794238683128, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI226510982, Length=428, Percent_Identity=26.4018691588785, Blast_Score=139, Evalue=9e-34,
Organism=Escherichia coli, GI1787055, Length=373, Percent_Identity=24.9329758713137, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=31.8367346938775, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=30.241935483871, Blast_Score=100, Evalue=7e-22,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=35.3333333333333, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82379; Mature: 82379

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSQSQEIVFLDEPIASTAVKAAKAVKILTVDDDINFQRSTAFALSTLTILGSKIELTQA
CCCCCCCEEEECCCHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHH
FSYAEACQIVANEDDFAIALVDVVMETEDAGLRLVRGIREVLGNEKIRIILLTGQPGMAP
HHHHHHHHEEECCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
VFNVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISNIANAKRGLQLIAESSGALYT
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
SRNIKELSSKMLQQLAILLNLPSGGIVCVKAINDLSEFGHIHQIIGASGEFESYYGKALQ
CCCHHHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ELEQQHIRIQLELSLSSKQSRIEPQYTCLFFPGELAGNDYAVYLATGRLLDATETELIRV
HHHHHHEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCEECCCHHHHHHH
FSMNICGGLHSVSLMSQLDKIAFEDPLLKIPNRNVLIRTLDGILKEDVRDKFNLLLIDID
HHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCEEHHHHHHHHHHHHHCCCCEEEEEEC
KFSDFNHVFGSEHGNDMLKHVANSLREQFDASVLVSRLKDDKFAILGPKHLVTAALIEQL
CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHH
FVAPYQQGTSCITVNISTVTLPLELAEGDAVAAITQLNMALKKAKSLGIRQHVTYQPNND
HHCCCCCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
DVTSHFELLQALQLGITQGDIHIALQPQVSLQTGEVVGVEALARWTLPNGDKVPPLRFIP
CHHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCEEEHHHHHHCCCCCCCCCCCEEEEE
IAEATGLITQLGEQLFVQSCQAMHALAEAGYQNLRIGVNLSAMQFEQEKIVNQLHSHIEA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
AQIASKHIEIEVTESIAMQNFEVINKQLKALRNMNIKVAIDDFGTGFSSLAYLSKLTFDR
HHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
IKIDKSFIDNITTDDGAAAIVDSIILLGERFKMNVIAEGVETREQARWLKDRGCHDAQGY
HEECHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCE
FYAKPMPLQELLVWLANYQKSIL
EEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVSQSQEIVFLDEPIASTAVKAAKAVKILTVDDDINFQRSTAFALSTLTILGSKIELTQA
CCCCCCCEEEECCCHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHH
FSYAEACQIVANEDDFAIALVDVVMETEDAGLRLVRGIREVLGNEKIRIILLTGQPGMAP
HHHHHHHHEEECCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
VFNVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISNIANAKRGLQLIAESSGALYT
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
SRNIKELSSKMLQQLAILLNLPSGGIVCVKAINDLSEFGHIHQIIGASGEFESYYGKALQ
CCCHHHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ELEQQHIRIQLELSLSSKQSRIEPQYTCLFFPGELAGNDYAVYLATGRLLDATETELIRV
HHHHHHEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCEECCCHHHHHHH
FSMNICGGLHSVSLMSQLDKIAFEDPLLKIPNRNVLIRTLDGILKEDVRDKFNLLLIDID
HHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCEEHHHHHHHHHHHHHCCCCEEEEEEC
KFSDFNHVFGSEHGNDMLKHVANSLREQFDASVLVSRLKDDKFAILGPKHLVTAALIEQL
CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHH
FVAPYQQGTSCITVNISTVTLPLELAEGDAVAAITQLNMALKKAKSLGIRQHVTYQPNND
HHCCCCCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
DVTSHFELLQALQLGITQGDIHIALQPQVSLQTGEVVGVEALARWTLPNGDKVPPLRFIP
CHHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCEEEHHHHHHCCCCCCCCCCCEEEEE
IAEATGLITQLGEQLFVQSCQAMHALAEAGYQNLRIGVNLSAMQFEQEKIVNQLHSHIEA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
AQIASKHIEIEVTESIAMQNFEVINKQLKALRNMNIKVAIDDFGTGFSSLAYLSKLTFDR
HHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
IKIDKSFIDNITTDDGAAAIVDSIILLGERFKMNVIAEGVETREQARWLKDRGCHDAQGY
HEECHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCE
FYAKPMPLQELLVWLANYQKSIL
EEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]