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The map label for this gene is yhcM [H]

Identifier: 117919291

GI number: 117919291

Start: 971433

End: 972635

Strand: Reverse

Name: yhcM [H]

Synonym: Shewana3_0839

Alternate gene names: 117919291

Gene position: 972635-971433 (Counterclockwise)

Preceding gene: 117919293

Following gene: 117919290

Centisome position: 19.56

GC content: 52.62

Gene sequence:

>1203_bases
ATGACAAATTCCATGGTCTTAAACCCACTCACAACTGCAACTATTCCCCAATCACCTCAGGCCATTTATCAAGCCAAGAT
CGGCGCCGAGCTGATTGAAGATCCCGCGCAAGCACAGGCGGTACTCGCCTTAGATGAGCTGTATCAGCAGATTATTGGCC
AAACAGATGCTCAGCCACCCAAGGGCTTGTATCTGTGGGGCGATGTCGGCCGGGGTAAGACCTTTCTTATGGATTTGTTC
TTCGATGCCCTGCCACAACAGGGAAAGCTCAGGCTGCACTTTCATCGCTTTATGGCGCGGGTACACCAAGCCTTAAAAGA
ACATGCAGGGCAGCGCGATCCTCTTAAGTTGATCGCAAAAAATTTAGCGCAGGAGTGCAAGGTACTCTGTTTCGATGAGT
TTTTTGTATCAGACATAGGGGATGCCATGATCCTCGCCGGTTTGTTTGAAACCTTGTTTGCCCAAGGGGTGGTGCTAGTC
GCCACATCCAACATTCCCATCGAACGCTTATATGAGAATGGTCTTGCCAGACACAGATTTTTACCCTGCATTGCCCTGCT
CCAAGCCCATACCCAAATGCTGCATTTGAATGGCGAGCAAGACCACAGGTTGCACGCCTTGAATCACGAACCGTCGGCAG
AGTCCATTGCCGCCACCTCAAAGAATATTGGCCTGACTGCCACAGTGGATTTCGAGGCCATTTTTAAGGCGCTGACGCAT
GGCGCGCCCGTGCTTGAAGCGAGCACGCTGCGCATCTGTCAGCGGGATATTCCCGTCGTGCGCGCCACTGCTGAAGGCCA
GTTGCCATCGGTCGCTTGGTTTGATTTTCATGCCCTGTGCGATGGCCCGCGCTCGCAACTCGACTATATTGAAATTGCGA
GCCGATTTAAGGTGTTAATGCTAAGCAATGTGCCCAGACTTGGGGGCGAAGTAAAAGGCTGGATCCGCGCCCGCGGCACT
GAAGATGGCACAGGCGACAACCAAGCGGCCACTACGGGAGAGCGGCAACTGTCCTACGCCGCTAACGACGACCCCGCACG
GCGTTTTATCAGCCTTATCGATGAGTTATATGATCAAGGGGTGAGCTTATATTTAAGTTGCGACGTGCCACTGAGCGAAC
TCTACCAAGGCGGCGCCCTCAGTTTTGAGTTTCGCCGTACCTATAGTCGGCTCATTGAAATGAGCCAGCAAAGAGTAGAA
TGA

Upstream 100 bases:

>100_bases
TGTGTTAGGCTGGCAAGGTTTTTCAGCAGACTTAGGCTTAGCACCTCACACGAAATAAGCCCAAGCTTGCTGCCGCAAAG
GGATAACACTGACTCAATTG

Downstream 100 bases:

>100_bases
GGCGTCCCGCAATGGGCACGATTAACATCAGCAAGAAAGTGATATCAAGATGAATATTGGTGAATTATCCCAAAAGACCG
GACTTGCGGCGTCGCGGATC

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTNSMVLNPLTTATIPQSPQAIYQAKIGAELIEDPAQAQAVLALDELYQQIIGQTDAQPPKGLYLWGDVGRGKTFLMDLF
FDALPQQGKLRLHFHRFMARVHQALKEHAGQRDPLKLIAKNLAQECKVLCFDEFFVSDIGDAMILAGLFETLFAQGVVLV
ATSNIPIERLYENGLARHRFLPCIALLQAHTQMLHLNGEQDHRLHALNHEPSAESIAATSKNIGLTATVDFEAIFKALTH
GAPVLEASTLRICQRDIPVVRATAEGQLPSVAWFDFHALCDGPRSQLDYIEIASRFKVLMLSNVPRLGGEVKGWIRARGT
EDGTGDNQAATTGERQLSYAANDDPARRFISLIDELYDQGVSLYLSCDVPLSELYQGGALSFEFRRTYSRLIEMSQQRVE

Sequences:

>Translated_400_residues
MTNSMVLNPLTTATIPQSPQAIYQAKIGAELIEDPAQAQAVLALDELYQQIIGQTDAQPPKGLYLWGDVGRGKTFLMDLF
FDALPQQGKLRLHFHRFMARVHQALKEHAGQRDPLKLIAKNLAQECKVLCFDEFFVSDIGDAMILAGLFETLFAQGVVLV
ATSNIPIERLYENGLARHRFLPCIALLQAHTQMLHLNGEQDHRLHALNHEPSAESIAATSKNIGLTATVDFEAIFKALTH
GAPVLEASTLRICQRDIPVVRATAEGQLPSVAWFDFHALCDGPRSQLDYIEIASRFKVLMLSNVPRLGGEVKGWIRARGT
EDGTGDNQAATTGERQLSYAANDDPARRFISLIDELYDQGVSLYLSCDVPLSELYQGGALSFEFRRTYSRLIEMSQQRVE
>Mature_399_residues
TNSMVLNPLTTATIPQSPQAIYQAKIGAELIEDPAQAQAVLALDELYQQIIGQTDAQPPKGLYLWGDVGRGKTFLMDLFF
DALPQQGKLRLHFHRFMARVHQALKEHAGQRDPLKLIAKNLAQECKVLCFDEFFVSDIGDAMILAGLFETLFAQGVVLVA
TSNIPIERLYENGLARHRFLPCIALLQAHTQMLHLNGEQDHRLHALNHEPSAESIAATSKNIGLTATVDFEAIFKALTHG
APVLEASTLRICQRDIPVVRATAEGQLPSVAWFDFHALCDGPRSQLDYIEIASRFKVLMLSNVPRLGGEVKGWIRARGTE
DGTGDNQAATTGERQLSYAANDDPARRFISLIDELYDQGVSLYLSCDVPLSELYQGGALSFEFRRTYSRLIEMSQQRVE

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=375, Percent_Identity=32.5333333333333, Blast_Score=186, Evalue=3e-47,
Organism=Escherichia coli, GI1789627, Length=392, Percent_Identity=39.2857142857143, Blast_Score=246, Evalue=1e-66,
Organism=Caenorhabditis elegans, GI17505769, Length=328, Percent_Identity=33.5365853658537, Blast_Score=173, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6320783, Length=345, Percent_Identity=32.463768115942, Blast_Score=165, Evalue=1e-41,
Organism=Drosophila melanogaster, GI20129913, Length=463, Percent_Identity=31.317494600432, Blast_Score=164, Evalue=9e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 44418; Mature: 44287

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSMVLNPLTTATIPQSPQAIYQAKIGAELIEDPAQAQAVLALDELYQQIIGQTDAQPP
CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
KGLYLWGDVGRGKTFLMDLFFDALPQQGKLRLHFHRFMARVHQALKEHAGQRDPLKLIAK
CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
NLAQECKVLCFDEFFVSDIGDAMILAGLFETLFAQGVVLVATSNIPIERLYENGLARHRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCHHHHHH
LPCIALLQAHTQMLHLNGEQDHRLHALNHEPSAESIAATSKNIGLTATVDFEAIFKALTH
HHHHHHHHHHHHHEECCCCCCCCEEECCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHC
GAPVLEASTLRICQRDIPVVRATAEGQLPSVAWFDFHALCDGPRSQLDYIEIASRFKVLM
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LSNVPRLGGEVKGWIRARGTEDGTGDNQAATTGERQLSYAANDDPARRFISLIDELYDQG
HHCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHCC
VSLYLSCDVPLSELYQGGALSFEFRRTYSRLIEMSQQRVE
CEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNSMVLNPLTTATIPQSPQAIYQAKIGAELIEDPAQAQAVLALDELYQQIIGQTDAQPP
CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
KGLYLWGDVGRGKTFLMDLFFDALPQQGKLRLHFHRFMARVHQALKEHAGQRDPLKLIAK
CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
NLAQECKVLCFDEFFVSDIGDAMILAGLFETLFAQGVVLVATSNIPIERLYENGLARHRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCHHHHHH
LPCIALLQAHTQMLHLNGEQDHRLHALNHEPSAESIAATSKNIGLTATVDFEAIFKALTH
HHHHHHHHHHHHHEECCCCCCCCEEECCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHC
GAPVLEASTLRICQRDIPVVRATAEGQLPSVAWFDFHALCDGPRSQLDYIEIASRFKVLM
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LSNVPRLGGEVKGWIRARGTEDGTGDNQAATTGERQLSYAANDDPARRFISLIDELYDQG
HHCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHCC
VSLYLSCDVPLSELYQGGALSFEFRRTYSRLIEMSQQRVE
CEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]