Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
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Accession | NC_008577 |
Length | 4,972,204 |
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The map label for this gene is 117919283
Identifier: 117919283
GI number: 117919283
Start: 961644
End: 962621
Strand: Reverse
Name: 117919283
Synonym: Shewana3_0831
Alternate gene names: NA
Gene position: 962621-961644 (Counterclockwise)
Preceding gene: 117919286
Following gene: 117919282
Centisome position: 19.36
GC content: 52.25
Gene sequence:
>978_bases ATGGCAGGAATGCTAATGCGGGTTCTCACGTCGATACTCATTTTGGCTGCGACCTTATCGCTTACGGGTTGTGGCGATGA CAGGCCAGAGAAAATTGAGAAGTATCAACAACTCACTCAGCAGCGCCTCTCGACACTCAATACTATGCTCGAGGACGGCC AAGTACGTAACGCCAATCTGCTCAAGCAATACAGCAGTTTGCTCAAACAGCAAAAGCCCGATTTCGCGCCACTCTTGGAT GAATTAGCCAAGGATTCGACCGCCGAAGGGCCAATGTATACCTCGCTGAAGCGCCGCTTAGACGATGCCAAAAACTCGGC TAACTTTACCGATCTCGACCAGCAACTCGCCGAGGTTGAGAACCTTTATCAAGCGGCCGATCCCAGCCTGTATAACGACA TGCTTTCCGATCCAGTGAACGTGATTGCCGATATGTCGGAGGGCAAGCTTGCCCGTGTTAATGCCATCAGCCGTGAAGCG GCGGCCCTTGCCAATAATGCCGAAGATTTTGGCCCTGGTAGCCAATTGGTGGGTAACCCGGCTTACGGTAGCTGGCAGAC AGACTCGAGCGGCATGTCCTTCTGGGCTTGGTACGGCATGTATTCGATGTTTTCGAATATTTTCCACCGCCCCATTTATT ACGACCGTTGGTCGGGTAACCGTGGCTACAGCTATTACAACGACGTAGGTCGCTATCGCTACACCTCGCCAAAACAAGCA CAGGCGCAGGAAAAAACCTTCGAGCAGACCAAAAAACGTTTCGATTCTCAAGGGAAACGCTTCGACAGCCCCTATTCAAA ATCGCGTACAGGTGCCACGGCTCTCTCCCGTGAGAGCAGCAGCGCACCTAAAACCAATACCACAGCGAATAAGTCGAGCG CGCAGTCGGGCAGTAAATTCCGCTCAAATTATTCTAAAGACAGCAGTTTCCGTAATTCCAGCAACCGCACGACCCGCAGT GTGCGCCGAGGCAAGTAA
Upstream 100 bases:
>100_bases CTGTTTAGGGTACTATAACCTGTGAGGCAAACATATTGGGCAAGTCGATTATTATTGTCCGCCCATATTTGAGTTTTATT TCAGCACTTTTGGAGAAAAC
Downstream 100 bases:
>100_bases ACTAAAGGATCTCCCATGACATTATTTCAGGATTTCGGTATCACACCAGAGCTAGTCACCATACTGGCAATTGACCTCAC TATTGCGGTTATCTTATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MAGMLMRVLTSILILAATLSLTGCGDDRPEKIEKYQQLTQQRLSTLNTMLEDGQVRNANLLKQYSSLLKQQKPDFAPLLD ELAKDSTAEGPMYTSLKRRLDDAKNSANFTDLDQQLAEVENLYQAADPSLYNDMLSDPVNVIADMSEGKLARVNAISREA AALANNAEDFGPGSQLVGNPAYGSWQTDSSGMSFWAWYGMYSMFSNIFHRPIYYDRWSGNRGYSYYNDVGRYRYTSPKQA QAQEKTFEQTKKRFDSQGKRFDSPYSKSRTGATALSRESSSAPKTNTTANKSSAQSGSKFRSNYSKDSSFRNSSNRTTRS VRRGK
Sequences:
>Translated_325_residues MAGMLMRVLTSILILAATLSLTGCGDDRPEKIEKYQQLTQQRLSTLNTMLEDGQVRNANLLKQYSSLLKQQKPDFAPLLD ELAKDSTAEGPMYTSLKRRLDDAKNSANFTDLDQQLAEVENLYQAADPSLYNDMLSDPVNVIADMSEGKLARVNAISREA AALANNAEDFGPGSQLVGNPAYGSWQTDSSGMSFWAWYGMYSMFSNIFHRPIYYDRWSGNRGYSYYNDVGRYRYTSPKQA QAQEKTFEQTKKRFDSQGKRFDSPYSKSRTGATALSRESSSAPKTNTTANKSSAQSGSKFRSNYSKDSSFRNSSNRTTRS VRRGK >Mature_324_residues AGMLMRVLTSILILAATLSLTGCGDDRPEKIEKYQQLTQQRLSTLNTMLEDGQVRNANLLKQYSSLLKQQKPDFAPLLDE LAKDSTAEGPMYTSLKRRLDDAKNSANFTDLDQQLAEVENLYQAADPSLYNDMLSDPVNVIADMSEGKLARVNAISREAA ALANNAEDFGPGSQLVGNPAYGSWQTDSSGMSFWAWYGMYSMFSNIFHRPIYYDRWSGNRGYSYYNDVGRYRYTSPKQAQ AQEKTFEQTKKRFDSQGKRFDSPYSKSRTGATALSRESSSAPKTNTTANKSSAQSGSKFRSNYSKDSSFRNSSNRTTRSV RRGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36432; Mature: 36301
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGMLMRVLTSILILAATLSLTGCGDDRPEKIEKYQQLTQQRLSTLNTMLEDGQVRNANL CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LKQYSSLLKQQKPDFAPLLDELAKDSTAEGPMYTSLKRRLDDAKNSANFTDLDQQLAEVE HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH NLYQAADPSLYNDMLSDPVNVIADMSEGKLARVNAISREAAALANNAEDFGPGSQLVGNP HHHHHCCCHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCHHCCCC AYGSWQTDSSGMSFWAWYGMYSMFSNIFHRPIYYDRWSGNRGYSYYNDVGRYRYTSPKQA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHCCCCCCCCHHH QAQEKTFEQTKKRFDSQGKRFDSPYSKSRTGATALSRESSSAPKTNTTANKSSAQSGSKF HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHCCHHH RSNYSKDSSFRNSSNRTTRSVRRGK HHCCCCCHHHCCCCCHHHHHHHCCC >Mature Secondary Structure AGMLMRVLTSILILAATLSLTGCGDDRPEKIEKYQQLTQQRLSTLNTMLEDGQVRNANL HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LKQYSSLLKQQKPDFAPLLDELAKDSTAEGPMYTSLKRRLDDAKNSANFTDLDQQLAEVE HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH NLYQAADPSLYNDMLSDPVNVIADMSEGKLARVNAISREAAALANNAEDFGPGSQLVGNP HHHHHCCCHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCHHCCCC AYGSWQTDSSGMSFWAWYGMYSMFSNIFHRPIYYDRWSGNRGYSYYNDVGRYRYTSPKQA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHCCCCCCCCHHH QAQEKTFEQTKKRFDSQGKRFDSPYSKSRTGATALSRESSSAPKTNTTANKSSAQSGSKF HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHCCHHH RSNYSKDSSFRNSSNRTTRSVRRGK HHCCCCCHHHCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA