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The map label for this gene is ydcP [H]

Identifier: 117919252

GI number: 117919252

Start: 922790

End: 924706

Strand: Direct

Name: ydcP [H]

Synonym: Shewana3_0800

Alternate gene names: 117919252

Gene position: 922790-924706 (Clockwise)

Preceding gene: 117919248

Following gene: 117919253

Centisome position: 18.56

GC content: 47.57

Gene sequence:

>1917_bases
ATGAGCCAGCCAGAGATTTACACCCCTGAGACACTTTCTCACGTTAATAACCGTCTAGAGTTATTGGCGCCAGCAAAAAA
TGCCGATTATGGTATTGAAGCCATTCGCCATGGTGCCGATGCGGTTTATATCGGTGGTCCAGCATTTGGGGCGCGTGCAA
CGGCGGGTAACAGTGTGGAAGATATCGCTCGCCTATGTGCTTTTGCACATAAGTATCATGCTCAAGTGTTTGTCGCCCTC
AATACGATTCTGATGGACGATGAGCTCGAGACGGCTGAAAAACTGATTTGGGATGTGTATAACGCGGGCGCCGATGCACT
GATTGTGCAGGACATGGGCGTATTGCAACTTAATCTGCCGCCGATTGCGCTGCATGCTAGTACGCAAATGGACAACCGTA
ATCCCGAAAAAGTTGCCTTCTTAGAGCAAGTGGGATTCTCGCAGGTGGTATTGGCGCGCGAGCTGGGCTTAAGCCAAATC
CGTGAGGTTGCGGCTCATACCAATATGCAGATTGAGTTCTTTATCCACGGCGCCCTGTGTGTGGCCTACAGTGGATTATG
TAACTTAAGCCATGCCTTTAGTAATCGCAGTGCTAACCGCGGTGAATGTTCGCAAATGTGTCGTTTGCCGGGCAATCTAA
AGACTCGCCAAGGGGATGTGTTAGCACAAAACGAACACTTACTCTCATTAAAAGATAATAATCAAACCGATAACCTCGAA
GCCCTGATAGATGCTGGCGTGCGTTCGTTCAAAATCGAGGGGCGTTTAAAAGATTTAAGTTATGTAAAAAACGTGACTGC
TCATTATCGCCAAAAACTCGATGCCATTATGGCGCGTCGCCCTGAGTTTGTGGCTTCATCCCATGGCCGTACTGAGCATA
CTTTTACCCCAGATCCCGAAAAAACCTTTAATCGTGGCAGCACCGACTATTTTGTCCATGAGCGTAGCCAAGGGATTAAA
GATTTTCGCTCGCCCAAATATATTGGCCAAGATGTGGGTAAAGTGGTCGCTCTTGGTAAGGATTTTATTCAAGTCAGTTC
AACCCACGAATTTAATAACGGTGATGGGTTGGCTTACTTTCCACCCAATTATGCGATGGCAAAGCAGTCCGACGACAAGT
TGCAAGGTTTACGGGTAAACCGCGCCGAAGGCCATAAGCTGCATGTGTTACAAGTTCCACGGGATTTACGTGTTGGTATG
ACTTTATACCGTAACCATAATCAGGCATTTGAAGCCTTGTTAGCGAAAGAGTCGGCCAAGCGAATTATCGGTGTAGATAT
GCGTTTAACCGATACCGCTATGGGCGTAGCGCTGACTTTAACCGATATCTACGGCCTCAGTGCTACGGTTGAGTTGGAAG
TCGAAAAGACACCCGCCACCGACGCTGAAAAAACCTTGCAGACGATTCGTACACAATTATCGAAGCTTGGCAGTACCGAT
TTTACGGCGCGCCAGATCAGTATCGAAACCGCTCAGCCTTGGTTCCTGCCTGCTTCAACCCTTAACGGCCTGCGCCGTGA
TGCGGTAGCGGCATTAGAACTTGCCCGTGTTGAAGGTTACCAGCGCCCAAAACCTTGGAAATATAACCAAGATGCTGTGT
ATCCATTCAAACACTTAAGTTACTTAGGTAACGTGGCAAACGAAAAGGCGAAGGATTTTTATCAACGCCATGGCGTGATT
GAAATTCAAGATACCTACGAGAAAAACGGCGTGACTGAAGACGTGCCTTTGATGGTGACTAAGCACTGCCTGAGATTTAA
CTTTAATCTTTGTCCTAAGGAAGTGCCGGGAATAAAGGCCGATCCTATGGTGCTCGAAATCGGTAACGATGTACTTAAGT
TAGTATTTGATTGTCCTAAGTGCGAGATGCTGGTTGTCGGTGAAAACCGTCAGGTTCGCGGCCAAAAAGCGCTTTAA

Upstream 100 bases:

>100_bases
GCTTTAATCCAGCGAAAAATGATTTGCAGATAGAGCTGGATTTGAGTTTTTGTTATACTCGTCACCTTTTTCGTTATTGT
TCATTTTGAGCCTGTGAAGT

Downstream 100 bases:

>100_bases
TTAACGCCTTCATAGTAAGGGAGCATTGAGCATTAAATGCTCCCTTTTTTATTGTTTTTCAGCTGCTCAGCTTTCTCATT
GTTGCCTATGGGTTACTGAA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 638; Mature: 637

Protein sequence:

>638_residues
MSQPEIYTPETLSHVNNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCAFAHKYHAQVFVAL
NTILMDDELETAEKLIWDVYNAGADALIVQDMGVLQLNLPPIALHASTQMDNRNPEKVAFLEQVGFSQVVLARELGLSQI
REVAAHTNMQIEFFIHGALCVAYSGLCNLSHAFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTDNLE
ALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFVASSHGRTEHTFTPDPEKTFNRGSTDYFVHERSQGIK
DFRSPKYIGQDVGKVVALGKDFIQVSSTHEFNNGDGLAYFPPNYAMAKQSDDKLQGLRVNRAEGHKLHVLQVPRDLRVGM
TLYRNHNQAFEALLAKESAKRIIGVDMRLTDTAMGVALTLTDIYGLSATVELEVEKTPATDAEKTLQTIRTQLSKLGSTD
FTARQISIETAQPWFLPASTLNGLRRDAVAALELARVEGYQRPKPWKYNQDAVYPFKHLSYLGNVANEKAKDFYQRHGVI
EIQDTYEKNGVTEDVPLMVTKHCLRFNFNLCPKEVPGIKADPMVLEIGNDVLKLVFDCPKCEMLVVGENRQVRGQKAL

Sequences:

>Translated_638_residues
MSQPEIYTPETLSHVNNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCAFAHKYHAQVFVAL
NTILMDDELETAEKLIWDVYNAGADALIVQDMGVLQLNLPPIALHASTQMDNRNPEKVAFLEQVGFSQVVLARELGLSQI
REVAAHTNMQIEFFIHGALCVAYSGLCNLSHAFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTDNLE
ALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFVASSHGRTEHTFTPDPEKTFNRGSTDYFVHERSQGIK
DFRSPKYIGQDVGKVVALGKDFIQVSSTHEFNNGDGLAYFPPNYAMAKQSDDKLQGLRVNRAEGHKLHVLQVPRDLRVGM
TLYRNHNQAFEALLAKESAKRIIGVDMRLTDTAMGVALTLTDIYGLSATVELEVEKTPATDAEKTLQTIRTQLSKLGSTD
FTARQISIETAQPWFLPASTLNGLRRDAVAALELARVEGYQRPKPWKYNQDAVYPFKHLSYLGNVANEKAKDFYQRHGVI
EIQDTYEKNGVTEDVPLMVTKHCLRFNFNLCPKEVPGIKADPMVLEIGNDVLKLVFDCPKCEMLVVGENRQVRGQKAL
>Mature_637_residues
SQPEIYTPETLSHVNNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCAFAHKYHAQVFVALN
TILMDDELETAEKLIWDVYNAGADALIVQDMGVLQLNLPPIALHASTQMDNRNPEKVAFLEQVGFSQVVLARELGLSQIR
EVAAHTNMQIEFFIHGALCVAYSGLCNLSHAFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTDNLEA
LIDAGVRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFVASSHGRTEHTFTPDPEKTFNRGSTDYFVHERSQGIKD
FRSPKYIGQDVGKVVALGKDFIQVSSTHEFNNGDGLAYFPPNYAMAKQSDDKLQGLRVNRAEGHKLHVLQVPRDLRVGMT
LYRNHNQAFEALLAKESAKRIIGVDMRLTDTAMGVALTLTDIYGLSATVELEVEKTPATDAEKTLQTIRTQLSKLGSTDF
TARQISIETAQPWFLPASTLNGLRRDAVAALELARVEGYQRPKPWKYNQDAVYPFKHLSYLGNVANEKAKDFYQRHGVIE
IQDTYEKNGVTEDVPLMVTKHCLRFNFNLCPKEVPGIKADPMVLEIGNDVLKLVFDCPKCEMLVVGENRQVRGQKAL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=627, Percent_Identity=52.3125996810207, Blast_Score=607, Evalue=1e-175,
Organism=Escherichia coli, GI1788397, Length=446, Percent_Identity=27.8026905829596, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1789548, Length=306, Percent_Identity=30.3921568627451, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 71099; Mature: 70968

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPEIYTPETLSHVNNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVE
CCCCCCCCCHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCHH
DIARLCAFAHKYHAQVFVALNTILMDDELETAEKLIWDVYNAGADALIVQDMGVLQLNLP
HHHHHHHHHHHHHHEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCC
PIALHASTQMDNRNPEKVAFLEQVGFSQVVLARELGLSQIREVAAHTNMQIEFFIHGALC
CEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEEEHHHH
VAYSGLCNLSHAFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTDNLE
HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHH
ALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFVASSHGRTEHTFTPDPE
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCH
KTFNRGSTDYFVHERSQGIKDFRSPKYIGQDVGKVVALGKDFIQVSSTHEFNNGDGLAYF
HHHCCCCCCEEEECHHCCHHHHCCCHHHHHHHHHHHHHCHHHHEECCCCCCCCCCEEEEC
PPNYAMAKQSDDKLQGLRVNRAEGHKLHVLQVPRDLRVGMTLYRNHNQAFEALLAKESAK
CCCCCCCCCCCCHHCCEEEECCCCCEEEEEECCCHHHHCCCEECCCHHHHHHHHHHHHCC
RIIGVDMRLTDTAMGVALTLTDIYGLSATVELEVEKTPATDAEKTLQTIRTQLSKLGSTD
CEEEECEEEEHHHHCEEEEEEHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
FTARQISIETAQPWFLPASTLNGLRRDAVAALELARVEGYQRPKPWKYNQDAVYPFKHLS
CEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
YLGNVANEKAKDFYQRHGVIEIQDTYEKNGVTEDVPLMVTKHCLRFNFNLCPKEVPGIKA
HHHHHHHHHHHHHHHHCCEEEEECCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
DPMVLEIGNDVLKLVFDCPKCEMLVVGENRQVRGQKAL
CCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SQPEIYTPETLSHVNNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVE
CCCCCCCCHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCHH
DIARLCAFAHKYHAQVFVALNTILMDDELETAEKLIWDVYNAGADALIVQDMGVLQLNLP
HHHHHHHHHHHHHHEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCC
PIALHASTQMDNRNPEKVAFLEQVGFSQVVLARELGLSQIREVAAHTNMQIEFFIHGALC
CEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEEEHHHH
VAYSGLCNLSHAFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTDNLE
HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHH
ALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFVASSHGRTEHTFTPDPE
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCH
KTFNRGSTDYFVHERSQGIKDFRSPKYIGQDVGKVVALGKDFIQVSSTHEFNNGDGLAYF
HHHCCCCCCEEEECHHCCHHHHCCCHHHHHHHHHHHHHCHHHHEECCCCCCCCCCEEEEC
PPNYAMAKQSDDKLQGLRVNRAEGHKLHVLQVPRDLRVGMTLYRNHNQAFEALLAKESAK
CCCCCCCCCCCCHHCCEEEECCCCCEEEEEECCCHHHHCCCEECCCHHHHHHHHHHHHCC
RIIGVDMRLTDTAMGVALTLTDIYGLSATVELEVEKTPATDAEKTLQTIRTQLSKLGSTD
CEEEECEEEEHHHHCEEEEEEHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
FTARQISIETAQPWFLPASTLNGLRRDAVAALELARVEGYQRPKPWKYNQDAVYPFKHLS
CEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
YLGNVANEKAKDFYQRHGVIEIQDTYEKNGVTEDVPLMVTKHCLRFNFNLCPKEVPGIKA
HHHHHHHHHHHHHHHHCCEEEEECCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
DPMVLEIGNDVLKLVFDCPKCEMLVVGENRQVRGQKAL
CCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]