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The map label for this gene is yhcM [H]

Identifier: 117919143

GI number: 117919143

Start: 807705

End: 808871

Strand: Direct

Name: yhcM [H]

Synonym: Shewana3_0691

Alternate gene names: 117919143

Gene position: 807705-808871 (Clockwise)

Preceding gene: 117919140

Following gene: 117919144

Centisome position: 16.24

GC content: 47.73

Gene sequence:

>1167_bases
GTGGCCGTGGTAATATCGACGCAGTTTTTCCAAAGGATAAAAGAGAATTATAACGTGCCCCAGTTAAGCCCTTGGCAGCA
TTACCAAAAAGATCTTACTCGTGATGGTTTTTCCCATGATCCCGCGCAGGAAATGGCCGTAAAGGCACTGCAACGCGTCT
ACGAAGATTTAACCGCTGCCGAAGCGCCAAGCTCACTATTAGGCAAGTTATTGACCTCCTTTGGCCTTAAGTCTGCGCCT
GTCGCGCCTAAGGGGTTGTATCTGTGGGGCGGTGTCGGTCGCGGCAAAACCTACCTGATGGACACTTTTTTTGATGCGCT
GCCAGGTAATCAAAAACTAAGGGCGCACTTTCACCGTTTTATGCATCAACTGCATTTGGATCTGGATGCGCTCAAAGGCA
CTCGCGATCCTTTGTTAGTGATTGCCAAACAAATGGCGGCTAAATACCGAGTCATTTGTTTTGATGAGTTTTTTGTCTCT
GATATCACAGATGCCATGCTACTTGGCACCTTATTCCAAGCCCTCTTTAAAGAAGGCGTGGTCTTAGTCGCTACTTCAAA
CATTATTCCCGATGATTTGTATAAAAACGGATTGCAACGGGCACGATTCCTCCCCGCGATCGCCTTGATCAATCAGCATT
GTGAAGTACTCAATGTAGATTCGGGCATCGACTATCGTCTGCGTACTCTCGAACAGGCAGAGATTTATCACCATCCACTC
GATGAAGAGGCCGATACTAATCTGCTGCGTTATTTCCGGCAGTTAGCCCCCGAGGCTGAAATTTCAACCGATGCGATTGA
AATCGAAGGGCGCGCAATCAGCATTCGTCAACAGGCGCAAGGCGTGTTACTCGCGGATTTCAGGGCCTTATGCGATGGGC
CACGAAGTCAGCGCGATTATATGGAGTTGGCGCGGATTTATCATACCGTGTTGGTGAGTGGTATCGAACAAATGGGCGCA
TTTTTAACGGGGGATGATATCGCCAGACGTTTTTTAGCCATGGTGGATGAGTTTTACGAGCGCAACGTTAAGTTGATTGT
TTCCGCGCAGGTGCCGCTGGAAGAGATTTACGCCGATGGTTTATTGAGTTTTGAATTTAGACGCTGTCGCTCTCGCTTAA
TCGAAATGCAATCCCACGATTACTTAAAATCAGAGCATTTACCTTAG

Upstream 100 bases:

>100_bases
TATCCTTTCACGCTTAATCTTGCTTTGTTGTCGCCGAGTGCCGAAATATGGAATTCAGCGTCCTTTTGCTTGTTAGGGGA
TAAATATATGCCGCATCAGA

Downstream 100 bases:

>100_bases
GTTAGCGAGTGCCAATCATTGGAGGTTAGCGCGTTTTTTAGGCAAACCTCCTATGGCTCATCCATCCCAGTGAAAATCAG
CCTCACAGATCGATTTTTTA

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MAVVISTQFFQRIKENYNVPQLSPWQHYQKDLTRDGFSHDPAQEMAVKALQRVYEDLTAAEAPSSLLGKLLTSFGLKSAP
VAPKGLYLWGGVGRGKTYLMDTFFDALPGNQKLRAHFHRFMHQLHLDLDALKGTRDPLLVIAKQMAAKYRVICFDEFFVS
DITDAMLLGTLFQALFKEGVVLVATSNIIPDDLYKNGLQRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPL
DEEADTNLLRYFRQLAPEAEISTDAIEIEGRAISIRQQAQGVLLADFRALCDGPRSQRDYMELARIYHTVLVSGIEQMGA
FLTGDDIARRFLAMVDEFYERNVKLIVSAQVPLEEIYADGLLSFEFRRCRSRLIEMQSHDYLKSEHLP

Sequences:

>Translated_388_residues
MAVVISTQFFQRIKENYNVPQLSPWQHYQKDLTRDGFSHDPAQEMAVKALQRVYEDLTAAEAPSSLLGKLLTSFGLKSAP
VAPKGLYLWGGVGRGKTYLMDTFFDALPGNQKLRAHFHRFMHQLHLDLDALKGTRDPLLVIAKQMAAKYRVICFDEFFVS
DITDAMLLGTLFQALFKEGVVLVATSNIIPDDLYKNGLQRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPL
DEEADTNLLRYFRQLAPEAEISTDAIEIEGRAISIRQQAQGVLLADFRALCDGPRSQRDYMELARIYHTVLVSGIEQMGA
FLTGDDIARRFLAMVDEFYERNVKLIVSAQVPLEEIYADGLLSFEFRRCRSRLIEMQSHDYLKSEHLP
>Mature_387_residues
AVVISTQFFQRIKENYNVPQLSPWQHYQKDLTRDGFSHDPAQEMAVKALQRVYEDLTAAEAPSSLLGKLLTSFGLKSAPV
APKGLYLWGGVGRGKTYLMDTFFDALPGNQKLRAHFHRFMHQLHLDLDALKGTRDPLLVIAKQMAAKYRVICFDEFFVSD
ITDAMLLGTLFQALFKEGVVLVATSNIIPDDLYKNGLQRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPLD
EEADTNLLRYFRQLAPEAEISTDAIEIEGRAISIRQQAQGVLLADFRALCDGPRSQRDYMELARIYHTVLVSGIEQMGAF
LTGDDIARRFLAMVDEFYERNVKLIVSAQVPLEEIYADGLLSFEFRRCRSRLIEMQSHDYLKSEHLP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=406, Percent_Identity=33.743842364532, Blast_Score=220, Evalue=2e-57,
Organism=Escherichia coli, GI1789627, Length=374, Percent_Identity=49.4652406417112, Blast_Score=359, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI17505769, Length=349, Percent_Identity=33.810888252149, Blast_Score=214, Evalue=5e-56,
Organism=Saccharomyces cerevisiae, GI6320783, Length=330, Percent_Identity=32.7272727272727, Blast_Score=150, Evalue=3e-37,
Organism=Drosophila melanogaster, GI20129913, Length=295, Percent_Identity=37.6271186440678, Blast_Score=192, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 44204; Mature: 44073

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVVISTQFFQRIKENYNVPQLSPWQHYQKDLTRDGFSHDPAQEMAVKALQRVYEDLTAA
CEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
EAPSSLLGKLLTSFGLKSAPVAPKGLYLWGGVGRGKTYLMDTFFDALPGNQKLRAHFHRF
CCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
MHQLHLDLDALKGTRDPLLVIAKQMAAKYRVICFDEFFVSDITDAMLLGTLFQALFKEGV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCE
VLVATSNIIPDDLYKNGLQRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPL
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCC
DEEADTNLLRYFRQLAPEAEISTDAIEIEGRAISIRQQAQGVLLADFRALCDGPRSQRDY
CCCCCHHHHHHHHHHCCCCCCCCCEEEECCCEEEEHHHHCCHHHHHHHHHHCCCCCHHHH
MELARIYHTVLVSGIEQMGAFLTGDDIARRFLAMVDEFYERNVKLIVSAQVPLEEIYADG
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCC
LLSFEFRRCRSRLIEMQSHDYLKSEHLP
HHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AVVISTQFFQRIKENYNVPQLSPWQHYQKDLTRDGFSHDPAQEMAVKALQRVYEDLTAA
EEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
EAPSSLLGKLLTSFGLKSAPVAPKGLYLWGGVGRGKTYLMDTFFDALPGNQKLRAHFHRF
CCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
MHQLHLDLDALKGTRDPLLVIAKQMAAKYRVICFDEFFVSDITDAMLLGTLFQALFKEGV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCE
VLVATSNIIPDDLYKNGLQRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPL
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCC
DEEADTNLLRYFRQLAPEAEISTDAIEIEGRAISIRQQAQGVLLADFRALCDGPRSQRDY
CCCCCHHHHHHHHHHCCCCCCCCCEEEECCCEEEEHHHHCCHHHHHHHHHHCCCCCHHHH
MELARIYHTVLVSGIEQMGAFLTGDDIARRFLAMVDEFYERNVKLIVSAQVPLEEIYADG
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCC
LLSFEFRRCRSRLIEMQSHDYLKSEHLP
HHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]