Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
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Accession | NC_008577 |
Length | 4,972,204 |
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The map label for this gene is 117919061
Identifier: 117919061
GI number: 117919061
Start: 712455
End: 713600
Strand: Direct
Name: 117919061
Synonym: Shewana3_0608
Alternate gene names: NA
Gene position: 712455-713600 (Clockwise)
Preceding gene: 117919060
Following gene: 117919062
Centisome position: 14.33
GC content: 48.43
Gene sequence:
>1146_bases GTGGCGATATCGGTAGCGGGCGGCGTTAGACCCGGCAAAATTATAGAGATAGAACATAGGCTCTATCAGCAACTTATTCT CGGTAAGCAAAAGGCCGGTCCTACCTTATTGGATGATTTAGACCGAGAGCTTGAAGCCGATGCCAATAAGCTCGATGTCG AGCGAGAGGCGATTCTGTCGCGGCTACTCAAACAAATTCAGGCCCGTGAAGTCTTTGAGGCCATCTCAAATCAACTCACC GAAACAGTCAATAATGCCATTGAGCATCAACTGGCATCCCCAGAGTTAGTGCTGGCTAAGTCGGAGATTAACGAGTCACA GATCCTGTTGCTCGAGCTATTGCTGGCCAAAAACCTAGATGCGACGCGGTTAAGACCTTTAATCAGTAATTTGAGCTGGT TATGCCGCGATTTAACCAATATGGTCAATAGCCCGGCATTTCGGGCACGGCGCCCGCAAAGTTCAGATGTGCGCGTCACT GATATCAAATTAGTGATGAATTACATTGGCATCGAAAACCTGCGCACCATTATTCCTTATTTTTGCCTACGTAATTGGCT GCCCAGTGGCAACGCTAAGTTACTCTGGACCACCCGCAAGCTGTGGCGCTATAGCATCGTCAGTGGAATAGCAGCGAATG CGTTAGCACAGCTTCATAATACTGACTCAGCCTTAGTTTATAGTGGTGCATTAATGAATCAGTTAGGCACCTCGGTTGTG CTTAGCTTGAGCGCGCGTTTATTTGATAAAACTTGGGGCAATTGGATCCGCGAGGCCAGCTCGAGTCGCGATAAAGAAGT GTATGATGCGGTGATTGCCACTGAGTTTCCGGCCAAGGCGGTATTTGAGCAAGTGCTGGCTCACGGGCACAAACTCAATT GGCAGCTATTGGAGTTACTGAAGTTTGAGCATAGCCCCTTAACCCTGTTGTTAAAGGAACTAGACCAAACCTTAACTTAC CGCGAACTCTCTATGCCAGCTGCCATAGTGGCACGGGCGAATTGTTATGCTAAGGTGCTGTTGCTCGAGGAGATGCGCCA AATCGAGCCGCAGGAAAAACGCTTAATGTTCGATTATTACGAGCTGAGCGAACAGGAAGTGCTGCGCCTAAAAGCACAGA ATTATCGGAAGTTGGATCTGCTGTGA
Upstream 100 bases:
>100_bases CTTATTGCCAAGATTTAACCTATATGCTGAAATTGTCATGTTTTTAACGATTTTAGCGTATGCGCGCCACTTAGCACGGG CGAGATAGGAAAGATAAACT
Downstream 100 bases:
>100_bases TCTGCACGCCGTTCCCATCGGTGTCCTATTGCGGCACTGATGTGGAGGACGGGAAATGCCAAGCTGGCAAGCATCTGTAT TAAATACTATTTTATCTTAT
Product: putative signal transduction protein
Products: NA
Alternate protein names: HD Superfamily Hydrolase; Metal-Dependent Hydrolase HDOD
Number of amino acids: Translated: 381; Mature: 380
Protein sequence:
>381_residues MAISVAGGVRPGKIIEIEHRLYQQLILGKQKAGPTLLDDLDRELEADANKLDVEREAILSRLLKQIQAREVFEAISNQLT ETVNNAIEHQLASPELVLAKSEINESQILLLELLLAKNLDATRLRPLISNLSWLCRDLTNMVNSPAFRARRPQSSDVRVT DIKLVMNYIGIENLRTIIPYFCLRNWLPSGNAKLLWTTRKLWRYSIVSGIAANALAQLHNTDSALVYSGALMNQLGTSVV LSLSARLFDKTWGNWIREASSSRDKEVYDAVIATEFPAKAVFEQVLAHGHKLNWQLLELLKFEHSPLTLLLKELDQTLTY RELSMPAAIVARANCYAKVLLLEEMRQIEPQEKRLMFDYYELSEQEVLRLKAQNYRKLDLL
Sequences:
>Translated_381_residues MAISVAGGVRPGKIIEIEHRLYQQLILGKQKAGPTLLDDLDRELEADANKLDVEREAILSRLLKQIQAREVFEAISNQLT ETVNNAIEHQLASPELVLAKSEINESQILLLELLLAKNLDATRLRPLISNLSWLCRDLTNMVNSPAFRARRPQSSDVRVT DIKLVMNYIGIENLRTIIPYFCLRNWLPSGNAKLLWTTRKLWRYSIVSGIAANALAQLHNTDSALVYSGALMNQLGTSVV LSLSARLFDKTWGNWIREASSSRDKEVYDAVIATEFPAKAVFEQVLAHGHKLNWQLLELLKFEHSPLTLLLKELDQTLTY RELSMPAAIVARANCYAKVLLLEEMRQIEPQEKRLMFDYYELSEQEVLRLKAQNYRKLDLL >Mature_380_residues AISVAGGVRPGKIIEIEHRLYQQLILGKQKAGPTLLDDLDRELEADANKLDVEREAILSRLLKQIQAREVFEAISNQLTE TVNNAIEHQLASPELVLAKSEINESQILLLELLLAKNLDATRLRPLISNLSWLCRDLTNMVNSPAFRARRPQSSDVRVTD IKLVMNYIGIENLRTIIPYFCLRNWLPSGNAKLLWTTRKLWRYSIVSGIAANALAQLHNTDSALVYSGALMNQLGTSVVL SLSARLFDKTWGNWIREASSSRDKEVYDAVIATEFPAKAVFEQVLAHGHKLNWQLLELLKFEHSPLTLLLKELDQTLTYR ELSMPAAIVARANCYAKVLLLEEMRQIEPQEKRLMFDYYELSEQEVLRLKAQNYRKLDLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43445; Mature: 43314
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISVAGGVRPGKIIEIEHRLYQQLILGKQKAGPTLLDDLDRELEADANKLDVEREAILS CEEECCCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH RLLKQIQAREVFEAISNQLTETVNNAIEHQLASPELVLAKSEINESQILLLELLLAKNLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHHHHCCCC ATRLRPLISNLSWLCRDLTNMVNSPAFRARRPQSSDVRVTDIKLVMNYIGIENLRTIIPY HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH FCLRNWLPSGNAKLLWTTRKLWRYSIVSGIAANALAQLHNTDSALVYSGALMNQLGTSVV HHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LSLSARLFDKTWGNWIREASSSRDKEVYDAVIATEFPAKAVFEQVLAHGHKLNWQLLELL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHH KFEHSPLTLLLKELDQTLTYRELSMPAAIVARANCYAKVLLLEEMRQIEPQEKRLMFDYY HCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ELSEQEVLRLKAQNYRKLDLL HCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure AISVAGGVRPGKIIEIEHRLYQQLILGKQKAGPTLLDDLDRELEADANKLDVEREAILS EEECCCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH RLLKQIQAREVFEAISNQLTETVNNAIEHQLASPELVLAKSEINESQILLLELLLAKNLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHHHHCCCC ATRLRPLISNLSWLCRDLTNMVNSPAFRARRPQSSDVRVTDIKLVMNYIGIENLRTIIPY HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH FCLRNWLPSGNAKLLWTTRKLWRYSIVSGIAANALAQLHNTDSALVYSGALMNQLGTSVV HHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LSLSARLFDKTWGNWIREASSSRDKEVYDAVIATEFPAKAVFEQVLAHGHKLNWQLLELL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHH KFEHSPLTLLLKELDQTLTYRELSMPAAIVARANCYAKVLLLEEMRQIEPQEKRLMFDYY HCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ELSEQEVLRLKAQNYRKLDLL HCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA