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The map label for this gene is sspB [H]

Identifier: 117919058

GI number: 117919058

Start: 708151

End: 708588

Strand: Direct

Name: sspB [H]

Synonym: Shewana3_0605

Alternate gene names: 117919058

Gene position: 708151-708588 (Clockwise)

Preceding gene: 117919057

Following gene: 117919059

Centisome position: 14.24

GC content: 47.26

Gene sequence:

>438_bases
ATGAAAGCGTTGACTCCAAATCGTCCTTATTTACTCAGGGCTTACTACGATTGGTTGATGGACAACCAATTAACGCCTCA
CGTTGTCGTGGATGCCTTTGTGAAAGGCACCCAAGTACCACAGCAGTACGTGAAGGATGGCCAGATCGTATTAAATATCG
CGGCCAGCGCGGTGGGCAATTTGCAAATTGGTAATGAATTTGTGGAGTTCAATGCGCGTTTCGGTGGTGTACCTCAACAG
GTATTATTGCCAATGGCCTCGATTGTGGCCATTTACGCCCGTGAAAATGGTGCAGGGACTGTCTTCGATATTGAAGATGC
GTACTTAGTCGAAGAAGAAGCCGAATCGACCTTGTCTGTTATCGAGACAAACGAGAAGCCAACCGAACCAACGGATGAGC
CGCCTAAGCGTCGCAGTCATTTAACCTTAGTTAAATAG

Upstream 100 bases:

>100_bases
TAGCGAAAGACATCAAAGCCTACATGACACGTATTTTCGAGCGTGAATCATTTAAAGCTTCGTTGACTGAAGCTGAACGC
GAAATGCGCATGGGAATGTA

Downstream 100 bases:

>100_bases
GTTACTTGCACCCTGTTCTATACTCTTGAAAGCCAGTCTATCGACTGGCTTTTTATTGGATAAAAGTTTAATCCGCGCAA
AGGCCTGTGGTAGCATTTGC

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKALTPNRPYLLRAYYDWLMDNQLTPHVVVDAFVKGTQVPQQYVKDGQIVLNIAASAVGNLQIGNEFVEFNARFGGVPQQ
VLLPMASIVAIYARENGAGTVFDIEDAYLVEEEAESTLSVIETNEKPTEPTDEPPKRRSHLTLVK

Sequences:

>Translated_145_residues
MKALTPNRPYLLRAYYDWLMDNQLTPHVVVDAFVKGTQVPQQYVKDGQIVLNIAASAVGNLQIGNEFVEFNARFGGVPQQ
VLLPMASIVAIYARENGAGTVFDIEDAYLVEEEAESTLSVIETNEKPTEPTDEPPKRRSHLTLVK
>Mature_145_residues
MKALTPNRPYLLRAYYDWLMDNQLTPHVVVDAFVKGTQVPQQYVKDGQIVLNIAASAVGNLQIGNEFVEFNARFGGVPQQ
VLLPMASIVAIYARENGAGTVFDIEDAYLVEEEAESTLSVIETNEKPTEPTDEPPKRRSHLTLVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=131, Percent_Identity=59.5419847328244, Blast_Score=162, Evalue=1e-41,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 16133; Mature: 16133

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALTPNRPYLLRAYYDWLMDNQLTPHVVVDAFVKGTQVPQQYVKDGQIVLNIAASAVGN
CCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHCCCEEEEEEEHHHHCC
LQIGNEFVEFNARFGGVPQQVLLPMASIVAIYARENGAGTVFDIEDAYLVEEEAESTLSV
CEECCCEEEECCCCCCCCHHHHHHHHHHHHEEECCCCCEEEEECCCCEEEHHHHHHHHHH
IETNEKPTEPTDEPPKRRSHLTLVK
EECCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MKALTPNRPYLLRAYYDWLMDNQLTPHVVVDAFVKGTQVPQQYVKDGQIVLNIAASAVGN
CCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHCCCEEEEEEEHHHHCC
LQIGNEFVEFNARFGGVPQQVLLPMASIVAIYARENGAGTVFDIEDAYLVEEEAESTLSV
CEECCCEEEECCCCCCCCHHHHHHHHHHHHEEECCCCCEEEEECCCCEEEHHHHHHHHHH
IETNEKPTEPTDEPPKRRSHLTLVK
EECCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]