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The map label for this gene is petC [H]

Identifier: 117919056

GI number: 117919056

Start: 706727

End: 707425

Strand: Direct

Name: petC [H]

Synonym: Shewana3_0603

Alternate gene names: 117919056

Gene position: 706727-707425 (Clockwise)

Preceding gene: 117919055

Following gene: 117919057

Centisome position: 14.21

GC content: 45.06

Gene sequence:

>699_bases
ATGAAAAAATTACTGATTGCATTAGTTACATTGATCCCGACGCTGGCAATGGCCGCGAGTGGACACAATGTACATTTAGA
AAAAGCCAATGTTGATCTGCATGATAAGGCTTCTTTAGAGCGTGGTCTGGACATGTTCCAACACTATTGCTCTGGTTGTC
ACAGCACTCAGTATCAACGCTATGAGCGTGTGGCGAACGATATCGGTATTTCAGCCGATGATATGCGTAGCAAGTACATG
TTTACCGATGCCAAAATCGGTGAACTGATGCAAAACGCAATTCCACACAAAGATGCAGCTAAGTGGTTCGGTGCAACACC
ACCAGACTTAACCTTAGTCGCACGTGTTCGTGGCGAAGATTGGGTGTATTCATACCTCAAGGGCTTCTACAAAGACCCAA
GCCGTCCATTCGGCGTAAACAACACTGTCTTCCCATCTGTGGGTATGCCACACGTTCTTGAAGAACTGCAAGGCACACCT
GTTAAGCAAGAAGATGGCACTATTGTGGTCTCTGGTGGTAAGTTAAATGCAGAAGAGTATGACCAAGCAGTTCGTGATAT
CACTGGCTTCTTAGTCTATTCGGCTGAACCTGTTAAGTTAGAGCGTCAAGCTTTAGGTTGGTGGGTACTTGGATTCCTGT
TTATCTTCTTTATTGTGGCCTACCTCTTGAAGAAAGAGTACTGGAAAGATGTACACTAG

Upstream 100 bases:

>100_bases
CACGTATCTTCACTGTGACGTATTTCGGCTACTTCTTATTACTGTGGTTATACAGCAAAAATGAGAAAACTAAGCCTGTT
CCAGCGAGGTTGACACACTA

Downstream 100 bases:

>100_bases
GCACCAATAACGGGTAAAATATAGTATCCGCATAGTGTAAACGGGGGGCTTTGCCCCTCGTTTACTTTTGTTTTATTTCG
ACTCTGGAGGGTATCAATGG

Product: cytochrome c1

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKKLLIALVTLIPTLAMAASGHNVHLEKANVDLHDKASLERGLDMFQHYCSGCHSTQYQRYERVANDIGISADDMRSKYM
FTDAKIGELMQNAIPHKDAAKWFGATPPDLTLVARVRGEDWVYSYLKGFYKDPSRPFGVNNTVFPSVGMPHVLEELQGTP
VKQEDGTIVVSGGKLNAEEYDQAVRDITGFLVYSAEPVKLERQALGWWVLGFLFIFFIVAYLLKKEYWKDVH

Sequences:

>Translated_232_residues
MKKLLIALVTLIPTLAMAASGHNVHLEKANVDLHDKASLERGLDMFQHYCSGCHSTQYQRYERVANDIGISADDMRSKYM
FTDAKIGELMQNAIPHKDAAKWFGATPPDLTLVARVRGEDWVYSYLKGFYKDPSRPFGVNNTVFPSVGMPHVLEELQGTP
VKQEDGTIVVSGGKLNAEEYDQAVRDITGFLVYSAEPVKLERQALGWWVLGFLFIFFIVAYLLKKEYWKDVH
>Mature_232_residues
MKKLLIALVTLIPTLAMAASGHNVHLEKANVDLHDKASLERGLDMFQHYCSGCHSTQYQRYERVANDIGISADDMRSKYM
FTDAKIGELMQNAIPHKDAAKWFGATPPDLTLVARVRGEDWVYSYLKGFYKDPSRPFGVNNTVFPSVGMPHVLEELQGTP
VKQEDGTIVVSGGKLNAEEYDQAVRDITGFLVYSAEPVKLERQALGWWVLGFLFIFFIVAYLLKKEYWKDVH

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. c1 functions as an electron donor to cytochrome c [H]

COG id: COG2857

COG function: function code C; Cytochrome c1

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6324639, Length=252, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24658292, Length=247, Percent_Identity=26.7206477732794, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002326
- InterPro:   IPR021157
- InterPro:   IPR009056 [H]

Pfam domain/function: PF02167 Cytochrom_C1 [H]

EC number: 1.10.2.2

Molecular weight: Translated: 26247; Mature: 26247

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLIALVTLIPTLAMAASGHNVHLEKANVDLHDKASLERGLDMFQHYCSGCHSTQYQR
CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
YERVANDIGISADDMRSKYMFTDAKIGELMQNAIPHKDAAKWFGATPPDLTLVARVRGED
HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEEECCCH
WVYSYLKGFYKDPSRPFGVNNTVFPSVGMPHVLEELQGTPVKQEDGTIVVSGGKLNAEEY
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
DQAVRDITGFLVYSAEPVKLERQALGWWVLGFLFIFFIVAYLLKKEYWKDVH
HHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKLLIALVTLIPTLAMAASGHNVHLEKANVDLHDKASLERGLDMFQHYCSGCHSTQYQR
CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
YERVANDIGISADDMRSKYMFTDAKIGELMQNAIPHKDAAKWFGATPPDLTLVARVRGED
HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEEECCCH
WVYSYLKGFYKDPSRPFGVNNTVFPSVGMPHVLEELQGTPVKQEDGTIVVSGGKLNAEEY
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
DQAVRDITGFLVYSAEPVKLERQALGWWVLGFLFIFFIVAYLLKKEYWKDVH
HHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA