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The map label for this gene is ydhJ [C]

Identifier: 117918971

GI number: 117918971

Start: 606137

End: 607417

Strand: Direct

Name: ydhJ [C]

Synonym: Shewana3_0517

Alternate gene names: 117918971

Gene position: 606137-607417 (Clockwise)

Preceding gene: 117918970

Following gene: 117918972

Centisome position: 12.19

GC content: 54.41

Gene sequence:

>1281_bases
ATGAATTCATTTACTCAAAAATCGTCTTTCCAAACGTTGGGCACAGTGTCTACTGCGGGCTTAAGGTCGTTGTTTACTCC
TTCCCGTTTAGTATTGGCCTTGATGCTGACCTCCTTAACCCTAACGCCGAGCTTCGCGGGTGAAGGCCATGATCACGACG
CTGAAAAGGTCACCAATAAGGCAGAAAAAAGCGCTTCAGCGACTGAAGATGACCATGGTGAGCAGGCACTCACTTTTACG
CCTGCGCAGTTGGAACTCGCTGGCGTGCGCCTGTTGCCCTTGAGCAGCGATAGCTTAAGTTTTAGCAATCTCAACCTCGA
TACTATGGCGACCGCCACTCTAGTCGTTGACCGTGATAGAACCGCGACCTTAGCGCCGCAGCTGGATGTGCGGGTGCAGG
CGCGCCATGTGGTGCCCGGCCAAGAGGTGAAAAAAGGTGAGCCCTTACTGACCTTAGGCGGTGCAGAAGTCGCCAAGGCG
CAGGCGGAATATATCAATGCCGCTGCCGAGTGGAGTCGAGTGCGTCGTATGAGTGAGGGCGCAGTGAGTGTCAGCCGCAG
AATGCAGGCGCAGGTCGATGCCGAACTGAAGCGAGCAATTCTGGAGGCGATCAAGATGACGGATGCACAAATTCGTACCT
TAGAGTCGACCCCAGAAGCTATCGGCAGCTATCAACTTTTAGCGCCTATCGATGGCCGTGTGCAGCAGGATATCGCCATG
CTAGGCCAAGTGTTCACCGCTGGCACACCATTAATGCAGTTGACCGATGAGTCGCACCTTTGGGTGGAAGCACAATTAAC
CCCGGCGCAGGCGGCCAATGTGAATGTCGGTGGCCCGGCGTTGGTGCAAGTGGGTGATAAAACGCTGGCGGGCAAGATTA
TTGGCCGTTCCCATGAGCTGGATAGCGTGACCCGCACCGAGCAGATTTTAGTCAGCATGCCAAACCCAGAGCATGTGCTG
CACGCCGGGCAATTTGCCGAGCTGTATTTTGCCGATGCGCCTAAGGGCAGCGACTTATCATCAGGCTTCTCTTCTGGAAT
CGTCTTACCCGATGCGGCGCTAACCCGCAGTGGTGACGGCGATTGGCAGATCTTTATTCAAGACGAAGATGGTTTTGAAG
CCATTGAGGTGGAGCTAGTGCAGCGTCAGCGCGGCTTAAGTTTAGTGCGCGGCGACAAGTTAGATAAGGCACGACAGGCA
CAACTAAAAGTGGTGGTGGGAGGCGCATTTTTCTTGGCGTCGGAGCAGGCTAAAGCTGGCTTTGATATTCATGCCCACTA
A

Upstream 100 bases:

>100_bases
GCTGCCCATGATTGACACCTTAGCCGACACATCCGTCGGTAAATCAAGGTCCACTTCTTCCACACATGCCGTGCCAGCAA
AGTAATCGTGAGGTAATACT

Downstream 100 bases:

>100_bases
TGCCGCTTAGTCGAACCTTCTCAAGCCCTATTTTTTTGCCTTTTTAAAGGTTTAGGGCGAATGCGCGAGGAATTTTTATG
TTGCAAAAAGCAATCGAAGC

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: Secretion Protein HlyD; RND Family Efflux Transporter MFP Subunit; Cation Efflux System Protein; Cation Efflux Protein; Cation Efflux Family Protein; RND Family Transporter Membrane-Fusion Protein; Metal Transporter-Like Exported Protein; Heavy Metal Resistance Protein Czcb; H+-Transporting Two-Sector ATPase Delta Subunit; Chemiosmotic Efflux System B Protein B; Cation Efflux System Protein CusB; Heavy Metal Efflux System Membrane Fusion Protein; Heavy Metal Efflux Pump Czcb Family; Secretion Protein HlyD Family Protein; Cobalt-Zinc-Cadmium Resistance Protein CzcB; Cobalt-Zinc-Cadmium Resistance Membrane-Fusion Protein; CzcB Family Heavy Metal Efflux Protein; Membrane-Fusion Protein-Like; Secretion Protein Putative RND Family Efflux Protein; Copper/Silver Efflux System Membrane Fusion Protein; Secretion Protein Putative RND Family Efflux Protein

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MNSFTQKSSFQTLGTVSTAGLRSLFTPSRLVLALMLTSLTLTPSFAGEGHDHDAEKVTNKAEKSASATEDDHGEQALTFT
PAQLELAGVRLLPLSSDSLSFSNLNLDTMATATLVVDRDRTATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAKA
QAEYINAAAEWSRVRRMSEGAVSVSRRMQAQVDAELKRAILEAIKMTDAQIRTLESTPEAIGSYQLLAPIDGRVQQDIAM
LGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNVGGPALVQVGDKTLAGKIIGRSHELDSVTRTEQILVSMPNPEHVL
HAGQFAELYFADAPKGSDLSSGFSSGIVLPDAALTRSGDGDWQIFIQDEDGFEAIEVELVQRQRGLSLVRGDKLDKARQA
QLKVVVGGAFFLASEQAKAGFDIHAH

Sequences:

>Translated_426_residues
MNSFTQKSSFQTLGTVSTAGLRSLFTPSRLVLALMLTSLTLTPSFAGEGHDHDAEKVTNKAEKSASATEDDHGEQALTFT
PAQLELAGVRLLPLSSDSLSFSNLNLDTMATATLVVDRDRTATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAKA
QAEYINAAAEWSRVRRMSEGAVSVSRRMQAQVDAELKRAILEAIKMTDAQIRTLESTPEAIGSYQLLAPIDGRVQQDIAM
LGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNVGGPALVQVGDKTLAGKIIGRSHELDSVTRTEQILVSMPNPEHVL
HAGQFAELYFADAPKGSDLSSGFSSGIVLPDAALTRSGDGDWQIFIQDEDGFEAIEVELVQRQRGLSLVRGDKLDKARQA
QLKVVVGGAFFLASEQAKAGFDIHAH
>Mature_426_residues
MNSFTQKSSFQTLGTVSTAGLRSLFTPSRLVLALMLTSLTLTPSFAGEGHDHDAEKVTNKAEKSASATEDDHGEQALTFT
PAQLELAGVRLLPLSSDSLSFSNLNLDTMATATLVVDRDRTATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAKA
QAEYINAAAEWSRVRRMSEGAVSVSRRMQAQVDAELKRAILEAIKMTDAQIRTLESTPEAIGSYQLLAPIDGRVQQDIAM
LGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNVGGPALVQVGDKTLAGKIIGRSHELDSVTRTEQILVSMPNPEHVL
HAGQFAELYFADAPKGSDLSSGFSSGIVLPDAALTRSGDGDWQIFIQDEDGFEAIEVELVQRQRGLSLVRGDKLDKARQA
QLKVVVGGAFFLASEQAKAGFDIHAH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45687; Mature: 45687

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFTQKSSFQTLGTVSTAGLRSLFTPSRLVLALMLTSLTLTPSFAGEGHDHDAEKVTNK
CCCCCCCCCCHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
AEKSASATEDDHGEQALTFTPAQLELAGVRLLPLSSDSLSFSNLNLDTMATATLVVDRDR
HHHCCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCHHHEEEEEEEECCC
TATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAKAQAEYINAAAEWSRVRRMSEG
CEEECCCCCEEEEEEECCCCHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
AVSVSRRMQAQVDAELKRAILEAIKMTDAQIRTLESTPEAIGSYQLLAPIDGRVQQDIAM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHCCHHHHCCEEEEECCCCHHHHHHHH
LGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNVGGPALVQVGDKTLAGKIIGRSHEL
HHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCC
DSVTRTEQILVSMPNPEHVLHAGQFAELYFADAPKGSDLSSGFSSGIVLPDAALTRSGDG
HHHHCCEEEEEECCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEECCCHHHCCCCCC
DWQIFIQDEDGFEAIEVELVQRQRGLSLVRGDKLDKARQAQLKVVVGGAFFLASEQAKAG
CEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCCCHHHCEEEEEEEEEEEEECCCCCCC
FDIHAH
CEEECC
>Mature Secondary Structure
MNSFTQKSSFQTLGTVSTAGLRSLFTPSRLVLALMLTSLTLTPSFAGEGHDHDAEKVTNK
CCCCCCCCCCHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
AEKSASATEDDHGEQALTFTPAQLELAGVRLLPLSSDSLSFSNLNLDTMATATLVVDRDR
HHHCCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCEECCCCCHHHEEEEEEEECCC
TATLAPQLDVRVQARHVVPGQEVKKGEPLLTLGGAEVAKAQAEYINAAAEWSRVRRMSEG
CEEECCCCCEEEEEEECCCCHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
AVSVSRRMQAQVDAELKRAILEAIKMTDAQIRTLESTPEAIGSYQLLAPIDGRVQQDIAM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHCCHHHHCCEEEEECCCCHHHHHHHH
LGQVFTAGTPLMQLTDESHLWVEAQLTPAQAANVNVGGPALVQVGDKTLAGKIIGRSHEL
HHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCC
DSVTRTEQILVSMPNPEHVLHAGQFAELYFADAPKGSDLSSGFSSGIVLPDAALTRSGDG
HHHHCCEEEEEECCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEECCCHHHCCCCCC
DWQIFIQDEDGFEAIEVELVQRQRGLSLVRGDKLDKARQAQLKVVVGGAFFLASEQAKAG
CEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCCCHHHCEEEEEEEEEEEEECCCCCCC
FDIHAH
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA