Click here to switch to the map view.

The map label for this gene is ylbK [H]

Identifier: 117918887

GI number: 117918887

Start: 496353

End: 498572

Strand: Direct

Name: ylbK [H]

Synonym: Shewana3_0430

Alternate gene names: 117918887

Gene position: 496353-498572 (Clockwise)

Preceding gene: 117918886

Following gene: 117918888

Centisome position: 9.98

GC content: 45.41

Gene sequence:

>2220_bases
ATGATGCGTCGAATACTCGCTTCTGTCTTTTTATGTTTTTTGCTAACGCCCTTGTATGCGGCGGAACGACCTAAGGTTGG
GCTGGTACTCAGTGGTGGCGGCGCTAAAGGTGCTGCGCACGTGGGCGTGCTTAAAATCCTAGAAGAACATCATATTCCCG
TGGACTACATCGCAGGTACCAGTATCGGTGCCTATGTTGCTGGCATGTACTCTTTGGGCTACAGCGCGAGTGAAGTCGAA
GCCATTATGATGGGGGTCGATTGGGACAGCGGTTATTCGGATACCATTCCGCGTAACGTCTTGAGTTATCGAGATAAGCA
GTTACGTGATCGTTACAATATTCCGCTCAACATAGGTTACAACGAAGGAGAGGTTAGGGCACCGAGTGGATTGTTGCGTG
GGCAAACCATGTCGCAGCTATTACGCCAATCAACCGATCTGGTACAGCAATTTGGCGATTTTGATGCCTTAGCCATTCCC
TATCGTGCGGTCGCGACGGATTTAGAAACCAGTTTGCCCGTCGTCATCGACCACGGCAGTTTAGTCAAAGCCATGCAGGC
ATCTGCGACTGTGCCGGGTGCACTGCAACCGACTCAGATCGATGGCAAGTTATTAGTCGATGGCGGTATTGCCAACAATA
TGCCCGTGGATGTGGTTAAGGCTATGGGCGCGGATATCATTATTGCCGTAGATATCGGCTCGCCGCTGGTGAAAAAAGAC
AAACTGGACAGCACGATTGCGGTGCTCGACCAGTTATCAAATTTTTTGACCAATGCCAGTACCGAAAAGCAAAAACAATT
ACTGACAGATAAAGACGTATTGATCCGTCCCGCTATCGATGCCTTAAGCACCACAGACTTTACCATCATGCCCTTGGCCC
TGACGCTGGGGAAAGAAGCCGCCAACGGTCAGTTAGATAAATTGCAGAGCATGAGTGTCAGCGCCGAAGAATATGCCGCC
TATGTGGATGCGAAGAAGGCTAAGGGCAAGTTATTAATGGCGGATGTGGCGCATCCTATTAAAGAAATCGTATTCGATAA
CCAATCTAAGGTTAGTCTGAACCTATTGAAGGAAACCTTAGATCTGAAAGCCGGCCAAGCCGTGACTAAAGATGAGCTAA
ACGAGGCGTTAAAACGGATTTATGCCTTAAACAAATTTGAGCGCGTGGATGCTGAGTTTGTGGAAGGCGAAGAAGGCCGG
GTATTGACTGTGACTACCCGTGCGAAATCCTGGGGGCCAAATTACTTCCAACTCGGCTTTAACTGGGAAGATGACTTTAG
TACCGATTCGGCCATCAGTTTCGACATGGCTTATACCATGACCGACTTAACCTTTAATGGTGGAGAGTGGCGTAACGAGG
TCAAGCTAGGGTTCGAAAAGCTATTTGCAACCGAGTTTTATCAACCCTTGGATAGGGATCAGGATTTTTATAGTCGAGCT
CGTTATCAATACGATATCCATAATTGGGATATATACGATAACAATAACCGTGCCCTTATTTTCAATAAGAAGACTCATAC
GATTGAAATGGGTATAGGTTATAACTATGTCCCTCAAGGTGTTATTGAATTGGGCTTGGTTGCGGAAAAGGGGGTTATTA
TTAATGATGCATGGCTAGTTAAAGATTTTGATTTTAACTCCTATGGTGCTTATCTAAGAGTGGGTTATGACAGCCTAGAC
AGCATTAGCTTCCCAACATCTGGTAATCGCATAACGCTAAACGTTTATGTACGTAATGAGAATTTTGATGATGTCGTCGA
TAACAATGACACTGACTACAGTGTTCAGATAGAAGCCGATTGGAAAGGGGCGTTAAGTGTGGGTAATCATTCCTTTGTAG
GCAAAGCATCATTGGCGACTATCAATAACGACAGTAGTAATAGCTTACATTTATCGGATTTAGGCGGTTTCTTAAATCTT
TCTGGCTACCATAAAGATTCATTAAATGGCGACCATAAGCTCTTTGGTGCCTTTGTCTATCAGTATGATCTGGGCCGAGA
TGCCTTATTAGGTATGAGAGATTACCCACTCTATTTAGGGCTAAGTTTAGAGGCGGGAAATGTATGGTATGAACGCTCAG
AGGTATCCCTCTCAGACCTTATCTATGCTTCTAGCCTTTACATAGGTACAGATACTTCTATGGGGCCGGCAGCACTGGGC
TTTGGTATTACAGATATGGGTGATAAATCCTTGTATTTATTTGTCGGTAAAGCCTTCTAA

Upstream 100 bases:

>100_bases
GCTTAATCACTCATCGGTTCAGATAAAATATCGCTGACGGTTAAATCAATAAATTTGTTAAGATAAGTTGAATTTTTTAT
CCAATAAAAAGTAGCCCATT

Downstream 100 bases:

>100_bases
ATCGATCGAAGGGCATAACTAAGGTTATGCCCTTCGTTTTTCCTGCTGAACACTATTCCTGCATAATCTAAAAATCGCGT
TTATACTGGTTTGCGCAAAT

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 739; Mature: 739

Protein sequence:

>739_residues
MMRRILASVFLCFLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHHIPVDYIAGTSIGAYVAGMYSLGYSASEVE
AIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGYNEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDALAIP
YRAVATDLETSLPVVIDHGSLVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEAANGQLDKLQSMSVSAEEYAA
YVDAKKAKGKLLMADVAHPIKEIVFDNQSKVSLNLLKETLDLKAGQAVTKDELNEALKRIYALNKFERVDAEFVEGEEGR
VLTVTTRAKSWGPNYFQLGFNWEDDFSTDSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
RYQYDIHNWDIYDNNNRALIFNKKTHTIEMGIGYNYVPQGVIELGLVAEKGVIINDAWLVKDFDFNSYGAYLRVGYDSLD
SISFPTSGNRITLNVYVRNENFDDVVDNNDTDYSVQIEADWKGALSVGNHSFVGKASLATINNDSSNSLHLSDLGGFLNL
SGYHKDSLNGDHKLFGAFVYQYDLGRDALLGMRDYPLYLGLSLEAGNVWYERSEVSLSDLIYASSLYIGTDTSMGPAALG
FGITDMGDKSLYLFVGKAF

Sequences:

>Translated_739_residues
MMRRILASVFLCFLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHHIPVDYIAGTSIGAYVAGMYSLGYSASEVE
AIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGYNEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDALAIP
YRAVATDLETSLPVVIDHGSLVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEAANGQLDKLQSMSVSAEEYAA
YVDAKKAKGKLLMADVAHPIKEIVFDNQSKVSLNLLKETLDLKAGQAVTKDELNEALKRIYALNKFERVDAEFVEGEEGR
VLTVTTRAKSWGPNYFQLGFNWEDDFSTDSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
RYQYDIHNWDIYDNNNRALIFNKKTHTIEMGIGYNYVPQGVIELGLVAEKGVIINDAWLVKDFDFNSYGAYLRVGYDSLD
SISFPTSGNRITLNVYVRNENFDDVVDNNDTDYSVQIEADWKGALSVGNHSFVGKASLATINNDSSNSLHLSDLGGFLNL
SGYHKDSLNGDHKLFGAFVYQYDLGRDALLGMRDYPLYLGLSLEAGNVWYERSEVSLSDLIYASSLYIGTDTSMGPAALG
FGITDMGDKSLYLFVGKAF
>Mature_739_residues
MMRRILASVFLCFLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHHIPVDYIAGTSIGAYVAGMYSLGYSASEVE
AIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGYNEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDALAIP
YRAVATDLETSLPVVIDHGSLVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEAANGQLDKLQSMSVSAEEYAA
YVDAKKAKGKLLMADVAHPIKEIVFDNQSKVSLNLLKETLDLKAGQAVTKDELNEALKRIYALNKFERVDAEFVEGEEGR
VLTVTTRAKSWGPNYFQLGFNWEDDFSTDSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
RYQYDIHNWDIYDNNNRALIFNKKTHTIEMGIGYNYVPQGVIELGLVAEKGVIINDAWLVKDFDFNSYGAYLRVGYDSLD
SISFPTSGNRITLNVYVRNENFDDVVDNNDTDYSVQIEADWKGALSVGNHSFVGKASLATINNDSSNSLHLSDLGGFLNL
SGYHKDSLNGDHKLFGAFVYQYDLGRDALLGMRDYPLYLGLSLEAGNVWYERSEVSLSDLIYASSLYIGTDTSMGPAALG
FGITDMGDKSLYLFVGKAF

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI148727335, Length=288, Percent_Identity=30.9027777777778, Blast_Score=110, Evalue=5e-24,
Organism=Homo sapiens, GI148727290, Length=288, Percent_Identity=30.9027777777778, Blast_Score=109, Evalue=8e-24,
Organism=Homo sapiens, GI260656037, Length=290, Percent_Identity=29.3103448275862, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI260656041, Length=290, Percent_Identity=29.3103448275862, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI116256487, Length=290, Percent_Identity=29.3103448275862, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI260656039, Length=290, Percent_Identity=29.3103448275862, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI260656043, Length=290, Percent_Identity=29.3103448275862, Blast_Score=107, Evalue=3e-23,
Organism=Escherichia coli, GI226510936, Length=322, Percent_Identity=27.639751552795, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI71997299, Length=290, Percent_Identity=28.2758620689655, Blast_Score=82, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71997289, Length=290, Percent_Identity=28.2758620689655, Blast_Score=82, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204778, Length=210, Percent_Identity=28.0952380952381, Blast_Score=68, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=289, Percent_Identity=29.0657439446367, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571388, Length=288, Percent_Identity=30.2083333333333, Blast_Score=86, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281376913, Length=288, Percent_Identity=29.8611111111111, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 81449; Mature: 81449

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRILASVFLCFLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHHIPVDYIAGT
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCC
SIGAYVAGMYSLGYSASEVEAIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGY
CHHHHHHHHHHCCCCHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
NEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDALAIPYRAVATDLETSLPVVIDHGS
CCCCEECCCCHHCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCEEEECCH
LVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHH
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEA
CCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCHHHHCCCCEEEEEEEEECCCCC
ANGQLDKLQSMSVSAEEYAAYVDAKKAKGKLLMADVAHPIKEIVFDNQSKVSLNLLKETL
CCCCHHHHHHCCCCHHHHHHHHCCHHCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH
DLKAGQAVTKDELNEALKRIYALNKFERVDAEFVEGEEGRVLTVTTRAKSWGPNYFQLGF
HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEEEEEC
NWEDDFSTDSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
CCCCCCCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
RYQYDIHNWDIYDNNNRALIFNKKTHTIEMGIGYNYVPQGVIELGLVAEKGVIINDAWLV
CEEEECCCEEEEECCCEEEEEECCCEEEEECCCCCCCCCHHHHHCEEECCCEEEECEEEE
KDFDFNSYGAYLRVGYDSLDSISFPTSGNRITLNVYVRNENFDDVVDNNDTDYSVQIEAD
EECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCHHCCCCCCCEEEEEEEC
WKGALSVGNHSFVGKASLATINNDSSNSLHLSDLGGFLNLSGYHKDSLNGDHKLFGAFVY
CCCEEECCCCCEECCEEEEEECCCCCCEEEHHHCCCEEECCCCCCCCCCCCHHEEEEEEE
QYDLGRDALLGMRDYPLYLGLSLEAGNVWYERSEVSLSDLIYASSLYIGTDTSMGPAALG
EEECCCHHHCCCCCCCEEEEEEEECCCEEEECCCCCHHHHHEEEEEEEECCCCCCCHHHC
FGITDMGDKSLYLFVGKAF
CCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MMRRILASVFLCFLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHHIPVDYIAGT
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCC
SIGAYVAGMYSLGYSASEVEAIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGY
CHHHHHHHHHHCCCCHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
NEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDALAIPYRAVATDLETSLPVVIDHGS
CCCCEECCCCHHCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCEEEECCH
LVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKD
HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHH
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEA
CCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCHHHHCCCCEEEEEEEEECCCCC
ANGQLDKLQSMSVSAEEYAAYVDAKKAKGKLLMADVAHPIKEIVFDNQSKVSLNLLKETL
CCCCHHHHHHCCCCHHHHHHHHCCHHCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH
DLKAGQAVTKDELNEALKRIYALNKFERVDAEFVEGEEGRVLTVTTRAKSWGPNYFQLGF
HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEEEEEC
NWEDDFSTDSAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
CCCCCCCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
RYQYDIHNWDIYDNNNRALIFNKKTHTIEMGIGYNYVPQGVIELGLVAEKGVIINDAWLV
CEEEECCCEEEEECCCEEEEEECCCEEEEECCCCCCCCCHHHHHCEEECCCEEEECEEEE
KDFDFNSYGAYLRVGYDSLDSISFPTSGNRITLNVYVRNENFDDVVDNNDTDYSVQIEAD
EECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCHHCCCCCCCEEEEEEEC
WKGALSVGNHSFVGKASLATINNDSSNSLHLSDLGGFLNLSGYHKDSLNGDHKLFGAFVY
CCCEEECCCCCEECCEEEEEECCCCCCEEEHHHCCCEEECCCCCCCCCCCCHHEEEEEEE
QYDLGRDALLGMRDYPLYLGLSLEAGNVWYERSEVSLSDLIYASSLYIGTDTSMGPAALG
EEECCCHHHCCCCCCCEEEEEEEECCCEEEECCCCCHHHHHEEEEEEEECCCCCCCHHHC
FGITDMGDKSLYLFVGKAF
CCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]