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The map label for this gene is ycaQ [H]

Identifier: 117918824

GI number: 117918824

Start: 404045

End: 405211

Strand: Direct

Name: ycaQ [H]

Synonym: Shewana3_0367

Alternate gene names: 117918824

Gene position: 404045-405211 (Clockwise)

Preceding gene: 117918820

Following gene: 117918831

Centisome position: 8.13

GC content: 49.87

Gene sequence:

>1167_bases
ATGTCGAGCCCTTTTTCACCCCGCGAGTGGTTACAGCTAAATATGCAACAGCAAGGTTTACTGCAGCCTCAGGCTTCAGT
TAGCGAGCTGATTAGCCGCCTTGGTTATGTGCAAATCGACTCCATCAATGTGGTCGAACGAGCACATCACCATGTATTGC
ATAGCCGGATGCCGCAGTATCAACCGCAGATGCTAGATACTGCGCTGGCGCAGGGGGAGATTTTTGAATATTGGTCCCAT
GCGGCGGCCTATCTGCCGATTGCCGACTATCGCTTTAGTTTGCAGCGTAAACAGCTGCTACAAAATGGCGGAAAACATTG
GTTTGAGCCAGACGATAAGGTGATGCAGGAAGTGCGTGCCCGCATTCGCGTCGATGGGCCACTTAAAGCCAGTGACTTTG
AGCATACTGAAGGTAAAAATGGCGCCTGGTGGGACTGGAAACCCGCCAAAAAGGCGCTAGAGCAGTTGTTTATGCGCGGC
GAGCTAATGGTGGTGAGGCGGGAGAAATTTCAAAAGTGCTATGATTTGACGGAACGTGTGTTGCCTAGTCATATCAATAC
CCAAGCACCGAGCGAGAGCGAATTTGCCCGCCACTTGATTGAGCGTTATCTCGATGCCCATGCCTTTGGCTCAGCGGCAC
AAATCGCTTATCTGCGCAAAGGTATAAAAGCGCACGTGTCTGAGCAATTAGCCGCTATGCAGTCTCAAGCTGAGTTGGCC
AGCTTTAAGGCCGAAGGGCAATGGTATTTTTATCGTCCCGAGCTGCAAATAACCGCTGCGCTACCCAACCGAGTCTGGCT
ACTCAATCCCTTCGATAATCTATTAATTCAGCGGCAACGATTAAAGCAATGGTTTGATTTTGATTATCAAATTGAAGTCT
ATGTTCCCGCCGAAAAACGCCAATATGGCTACTACTCCCTCGCGATTCTGTGGCGTGACCGCTTTGTTGGCCGTGTTGAT
GTGAAAGCCGAGCGGCAAAGCGGTTTATTGCTGTTACAGCAGCTGACCTTAGAAGCTGGATTCGATGGCATGGATGATGA
CTTCTGTGCGGCATTTGAGGCGGCAGTCACTGAGTATGCGCGCTTTAATGGCTGTAGTCGCTGGAAACTGGTGAAGGCTA
ACCATAAGGCATTTAAACAAAAATACGCACGGCAGCAGAAGATCTAA

Upstream 100 bases:

>100_bases
AAATATCCGACAAAAGTGAGACAACCATCCCTTGGATAATAAGCCGATAATGGCATCAATTTGAGGTGGTTATTCAAGGT
TATTGGCCTTTGGAGAGTGC

Downstream 100 bases:

>100_bases
TCGGGATCTTTACCGTTATCTGGGCGTTTGTCTTTAGTTGGTACATCCATCCAGCGAAAGCACAGGTACAGCAATGCCAA
AAAGATCAGTGGCAGGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSSPFSPREWLQLNMQQQGLLQPQASVSELISRLGYVQIDSINVVERAHHHVLHSRMPQYQPQMLDTALAQGEIFEYWSH
AAAYLPIADYRFSLQRKQLLQNGGKHWFEPDDKVMQEVRARIRVDGPLKASDFEHTEGKNGAWWDWKPAKKALEQLFMRG
ELMVVRREKFQKCYDLTERVLPSHINTQAPSESEFARHLIERYLDAHAFGSAAQIAYLRKGIKAHVSEQLAAMQSQAELA
SFKAEGQWYFYRPELQITAALPNRVWLLNPFDNLLIQRQRLKQWFDFDYQIEVYVPAEKRQYGYYSLAILWRDRFVGRVD
VKAERQSGLLLLQQLTLEAGFDGMDDDFCAAFEAAVTEYARFNGCSRWKLVKANHKAFKQKYARQQKI

Sequences:

>Translated_388_residues
MSSPFSPREWLQLNMQQQGLLQPQASVSELISRLGYVQIDSINVVERAHHHVLHSRMPQYQPQMLDTALAQGEIFEYWSH
AAAYLPIADYRFSLQRKQLLQNGGKHWFEPDDKVMQEVRARIRVDGPLKASDFEHTEGKNGAWWDWKPAKKALEQLFMRG
ELMVVRREKFQKCYDLTERVLPSHINTQAPSESEFARHLIERYLDAHAFGSAAQIAYLRKGIKAHVSEQLAAMQSQAELA
SFKAEGQWYFYRPELQITAALPNRVWLLNPFDNLLIQRQRLKQWFDFDYQIEVYVPAEKRQYGYYSLAILWRDRFVGRVD
VKAERQSGLLLLQQLTLEAGFDGMDDDFCAAFEAAVTEYARFNGCSRWKLVKANHKAFKQKYARQQKI
>Mature_387_residues
SSPFSPREWLQLNMQQQGLLQPQASVSELISRLGYVQIDSINVVERAHHHVLHSRMPQYQPQMLDTALAQGEIFEYWSHA
AAYLPIADYRFSLQRKQLLQNGGKHWFEPDDKVMQEVRARIRVDGPLKASDFEHTEGKNGAWWDWKPAKKALEQLFMRGE
LMVVRREKFQKCYDLTERVLPSHINTQAPSESEFARHLIERYLDAHAFGSAAQIAYLRKGIKAHVSEQLAAMQSQAELAS
FKAEGQWYFYRPELQITAALPNRVWLLNPFDNLLIQRQRLKQWFDFDYQIEVYVPAEKRQYGYYSLAILWRDRFVGRVDV
KAERQSGLLLLQQLTLEAGFDGMDDDFCAAFEAAVTEYARFNGCSRWKLVKANHKAFKQKYARQQKI

Specific function: Unknown

COG id: COG3214

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787145, Length=379, Percent_Identity=32.9815303430079, Blast_Score=191, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009351 [H]

Pfam domain/function: PF06224 DUF1006 [H]

EC number: NA

Molecular weight: Translated: 45352; Mature: 45221

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPFSPREWLQLNMQQQGLLQPQASVSELISRLGYVQIDSINVVERAHHHVLHSRMPQY
CCCCCCCHHHHHHCCHHHCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCC
QPQMLDTALAQGEIFEYWSHAAAYLPIADYRFSLQRKQLLQNGGKHWFEPDDKVMQEVRA
CHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
RIRVDGPLKASDFEHTEGKNGAWWDWKPAKKALEQLFMRGELMVVRREKFQKCYDLTERV
HEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH
LPSHINTQAPSESEFARHLIERYLDAHAFGSAAQIAYLRKGIKAHVSEQLAAMQSQAELA
HCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFKAEGQWYFYRPELQITAALPNRVWLLNPFDNLLIQRQRLKQWFDFDYQIEVYVPAEKR
HHCCCCCEEEECCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
QYGYYSLAILWRDRFVGRVDVKAERQSGLLLLQQLTLEAGFDGMDDDFCAAFEAAVTEYA
CCCEEEEEEEEHHHCCCEEECCCCHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RFNGCSRWKLVKANHKAFKQKYARQQKI
HHCCCCCEEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSPFSPREWLQLNMQQQGLLQPQASVSELISRLGYVQIDSINVVERAHHHVLHSRMPQY
CCCCCCHHHHHHCCHHHCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCC
QPQMLDTALAQGEIFEYWSHAAAYLPIADYRFSLQRKQLLQNGGKHWFEPDDKVMQEVRA
CHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
RIRVDGPLKASDFEHTEGKNGAWWDWKPAKKALEQLFMRGELMVVRREKFQKCYDLTERV
HEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH
LPSHINTQAPSESEFARHLIERYLDAHAFGSAAQIAYLRKGIKAHVSEQLAAMQSQAELA
HCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFKAEGQWYFYRPELQITAALPNRVWLLNPFDNLLIQRQRLKQWFDFDYQIEVYVPAEKR
HHCCCCCEEEECCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
QYGYYSLAILWRDRFVGRVDVKAERQSGLLLLQQLTLEAGFDGMDDDFCAAFEAAVTEYA
CCCEEEEEEEEHHHCCCEEECCCCHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RFNGCSRWKLVKANHKAFKQKYARQQKI
HHCCCCCEEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]