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The map label for this gene is ccmH [H]

Identifier: 117918694

GI number: 117918694

Start: 265777

End: 266256

Strand: Direct

Name: ccmH [H]

Synonym: Shewana3_0236

Alternate gene names: 117918694

Gene position: 265777-266256 (Clockwise)

Preceding gene: 117918693

Following gene: 117918695

Centisome position: 5.35

GC content: 46.88

Gene sequence:

>480_bases
GTGAGAACACTGACAAAAATCATCGGTGGTTTAGTGTTGTTGCTGAGTATGGCAACAGCGGCCATGGCGACACCCGTCGA
TACTTACGAGTTTAAATCGCCAGAAAACCAAAAACGTGGTTTATCGCTGGCCCATGAACTGCGTTGTCCGCAATGTCAAA
ACCAAAACCTGATCGACTCTAACTCACCCGTTGCCCGAGATCTGCGTCTTGAAGTCTACAAGATGGTTGATGAAGGCAAG
GGCGATGATGAGATCATCGAGTTTATGACGAGCCGCTATGGTGAGTTCGTTCTCTACAAACCTAAAATGGAAACCAAAAC
CTATATTCTTTGGTTAGGTCCAGTGGGTTTGTTGCTGCTCGGTCTGATCATTGGCTTCATCTTTATCCGCAAGCAACGTA
TCGGTGGCTGCACTGAGGCCGAGATCAGCGCCGAAGATCAAAAAGCGCTCGATGCTTTATTAAAGCGTGATACTAAATGA

Upstream 100 bases:

>100_bases
GTTTCCGTTACGCCGGTCCAATCGACCAGCGCGTATGGAGCGAAACTTTGTACCCCATGATCCAACAACTACAAGCTGAA
GCGGCGAAGGATGGTGCAGC

Downstream 100 bases:

>100_bases
AGTCATTTGCCTTAGCTGCAATCCTTGCGAGTCTGTCTGTTGCCTTTGCTGGTGGTGCCCAAGCGTACCCCGGCATGCAG
CAGGCAAACAAGCCGATAGA

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MRTLTKIIGGLVLLLSMATAAMATPVDTYEFKSPENQKRGLSLAHELRCPQCQNQNLIDSNSPVARDLRLEVYKMVDEGK
GDDEIIEFMTSRYGEFVLYKPKMETKTYILWLGPVGLLLLGLIIGFIFIRKQRIGGCTEAEISAEDQKALDALLKRDTK

Sequences:

>Translated_159_residues
MRTLTKIIGGLVLLLSMATAAMATPVDTYEFKSPENQKRGLSLAHELRCPQCQNQNLIDSNSPVARDLRLEVYKMVDEGK
GDDEIIEFMTSRYGEFVLYKPKMETKTYILWLGPVGLLLLGLIIGFIFIRKQRIGGCTEAEISAEDQKALDALLKRDTK
>Mature_159_residues
MRTLTKIIGGLVLLLSMATAAMATPVDTYEFKSPENQKRGLSLAHELRCPQCQNQNLIDSNSPVARDLRLEVYKMVDEGK
GDDEIIEFMTSRYGEFVLYKPKMETKTYILWLGPVGLLLLGLIIGFIFIRKQRIGGCTEAEISAEDQKALDALLKRDTK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1790512, Length=87, Percent_Identity=54.0229885057471, Blast_Score=103, Evalue=4e-24,
Organism=Escherichia coli, GI1788522, Length=110, Percent_Identity=42.7272727272727, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17884; Mature: 17884

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLTKIIGGLVLLLSMATAAMATPVDTYEFKSPENQKRGLSLAHELRCPQCQNQNLIDS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
NSPVARDLRLEVYKMVDEGKGDDEIIEFMTSRYGEFVLYKPKMETKTYILWLGPVGLLLL
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHH
GLIIGFIFIRKQRIGGCTEAEISAEDQKALDALLKRDTK
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRTLTKIIGGLVLLLSMATAAMATPVDTYEFKSPENQKRGLSLAHELRCPQCQNQNLIDS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
NSPVARDLRLEVYKMVDEGKGDDEIIEFMTSRYGEFVLYKPKMETKTYILWLGPVGLLLL
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHH
GLIIGFIFIRKQRIGGCTEAEISAEDQKALDALLKRDTK
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]