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The map label for this gene is ccmF [H]

Identifier: 117918692

GI number: 117918692

Start: 263235

End: 265214

Strand: Direct

Name: ccmF [H]

Synonym: Shewana3_0234

Alternate gene names: 117918692

Gene position: 263235-265214 (Clockwise)

Preceding gene: 117918690

Following gene: 117918693

Centisome position: 5.29

GC content: 49.6

Gene sequence:

>1980_bases
ATGATCCCAGAACTTGGACACTTTTCGCTGATTATAGGAGTGGCATTCGCCTTCTTATTAGTCAGCGTTCCCCTTATAGG
TGTTGCCCGTAAAGACCAATATCTAGTGAGGTATGCTTGGCCGTTAACCTACGGAATGTTCTTTTTTATCGCTTTATCCG
TAGTATCTCTTGGTTACAGCTTCGCCGTTGATGACTTCTCCGTTGCCTATGTGGCACATCACTCGAACTCCCAGTTACCT
ATCTTCTTTAAGATTGCGGCCGTATGGGGCGGTCATGAAGGGTCACTGCTGTTCTGGGTGTTTGCGCTATCGACCTGGGC
GGCTTCGGTTGCCTTATTCAGTAAAGGCTTAGAAGAAGTGTTCACCGCTAGGGTTTTAGCTGTACTGGCGCTGATCGTGA
TTGGCTTTAGCTTATTTATGCTACTCACCTCTAGCCCATTTGAACGCCTATTCCCAATGCCAGCCGAAGGTCGTGACTTA
AACCCAATGCTGCAGGACGTGGGCTTAATCTTCCATCCACCTATGCTGTACTTAGGTTATGTGGGCTTCTCGGTAAGCTT
CGCGTTTGCGATTGCAGCTCTGATGAGTGGTCACCTTGACTCTGCATGGGCACGTTGGTCACGTCCTTGGACTTTAGCCG
CTTGGATTTTCCTCACAGGCGGTATTGCATTAGGTTCTTGGTGGGCATACTACGAATTAGGCTGGGGTGGCTGGTGGTTC
TGGGATCCCGTAGAAAACGCTTCCTTTATGCCTTGGTTAGTCGGTACAGCATTAGTGCATTCACTGATCGTGACCGAAAA
ACGTGGTGCGTTCCGTAACTGGACCGTATTACTGTCTATCTTCGCGTTCTCTTTAAGCTTACTCGGTACCTTTATCGTGC
GTTCGGGTGTATTGACCTCAGTACACTCCTTCGCAGCCGATCCAAGCCGCGGTATGTTCATTCTGTTACTGCTGGGTCTT
GCGATTGGTGGTTCACTCACGCTGTTCGCCTTCCGCGCCAGTGAAATGAGCAGCCCTGCACGTTTCGAGCTGAAATCAAA
AGAAACCATGCTGTTAGTCTGTAACGTGTTACTCACGGTTGCAGCGGGTACTGTGTTGTTAGGAACTCTATATCCACTGC
TGATCGATGCCTTAGGCATGGGTAAGATTTCTGTTGGACCTCCATACTTCAATGCTGTGTTTGTGCCTATCGTCCTCGTA
CTGTTTGGCTTTATGGGTGTCGGTCCAATCATCCGCTGGAAGAAATCCAAAGCCGGTGAGCTCAAACGTCAATTACTGGT
GCCTGCATTAGTCTCTGCAGCGATTGGTATCGTGACACCGTTTATTGTGGATGGTGCGTTCAACGCTTGGGTTGCCTGTG
GTATCGCCGCTGCGTCTTGGATTGTGTTAGCGACGGCAAGAGCCGCGTATAACATCGTTAAGCCAAAAGAAGGCGAAGTG
AGCGTGGCACGTATGGGCCGCAGCGAACTAGGGATGATCTTAGCCCACTTAGGTATTGCCGTGTCGGTGATTGGTGCCAC
TATGGTATCGAACTACTCGGTTGAGAAGAGTGTGCGTATGGGCCCAGGCGTGAGCCAAGAGCTTGCGGGCTATACCTTTA
AGTATCTCGAGACTAAGAACGTCGTAGGTCCTAACTACACCGCGCAACAAGGTCAAATTGAGATCTACAAAGGCGATAAA
CTGCTGACGTTGCTCAAGCCTGATCGTCGCCAATACAATGTGCGTACTATGGACATGACCGAAGCGGGTATCGATTGGGG
TCTGTTCCGTGACTTATATGTCACCATGGGCGACCCAATCAGCAGCACTGAGTTTGCTGTGCGTTTGAACTACAAGCCAT
TTGTTCGTTGGTTATGGTTTGGAGCAATATTCATGATGGTTGGTGGTTTCTTCGCCGCATCGGATAAACGCTATCGCTCA
AAAGTGGCGGCTACGGTTAAGCCACAAGCTGAAAAAGCGAAATTAGCTACCGCGCAATAG

Upstream 100 bases:

>100_bases
CTAAAATGAACAAAATTTCGTGCATTTGTGTGAACAGCATGTTGTGCGTTGGTCTAGAGTCTTTCTAAATCAACATATTA
TTAGAGACTGAGGAAAACCC

Downstream 100 bases:

>100_bases
TTGGGGAATATATGAAGAAGTTGGTTCTGTTTATCCCATTAGTCATCTTTCTTGGCATGGGGGTATTTTTATACAAAGGA
TTGTTTTTAAATCCACAGAA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 659; Mature: 659

Protein sequence:

>659_residues
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPIIRWKKSKAGELKRQLLVPALVSAAIGIVTPFIVDGAFNAWVACGIAAASWIVLATARAAYNIVKPKEGEV
SVARMGRSELGMILAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKGDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRS
KVAATVKPQAEKAKLATAQ

Sequences:

>Translated_659_residues
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPIIRWKKSKAGELKRQLLVPALVSAAIGIVTPFIVDGAFNAWVACGIAAASWIVLATARAAYNIVKPKEGEV
SVARMGRSELGMILAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKGDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRS
KVAATVKPQAEKAKLATAQ
>Mature_659_residues
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPIIRWKKSKAGELKRQLLVPALVSAAIGIVTPFIVDGAFNAWVACGIAAASWIVLATARAAYNIVKPKEGEV
SVARMGRSELGMILAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKGDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRS
KVAATVKPQAEKAKLATAQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=653, Percent_Identity=49.6171516079632, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1790511, Length=590, Percent_Identity=38.3050847457627, Blast_Score=332, Evalue=7e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72273; Mature: 72273

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC
FAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEV
EEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHCCCHHHHHHH
VGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH
AAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHH
LKRQLLVPALVSAAIGIVTPFIVDGAFNAWVACGIAAASWIVLATARAAYNIVKPKEGEV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SVARMGRSELGMILAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKN
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSKVAATVKPQAEKAKLATAQ
CCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCHHHHHCCCCC
>Mature Secondary Structure
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC
FAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEV
EEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHCCCHHHHHHH
VGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH
AAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHH
LKRQLLVPALVSAAIGIVTPFIVDGAFNAWVACGIAAASWIVLATARAAYNIVKPKEGEV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SVARMGRSELGMILAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKN
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSKVAATVKPQAEKAKLATAQ
CCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA