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The map label for this gene is secY [H]

Identifier: 117918677

GI number: 117918677

Start: 252460

End: 253800

Strand: Direct

Name: secY [H]

Synonym: Shewana3_0219

Alternate gene names: 117918677

Gene position: 252460-253800 (Clockwise)

Preceding gene: 117918676

Following gene: 117918678

Centisome position: 5.08

GC content: 44.82

Gene sequence:

>1341_bases
ATGGCAAAACCAGGACTTGATTTAAAAAGCGCGAAAGGTGGACTTTCTGAGTTGAAAGCTCGCCTCCTGTTCGTGATTGG
TGCGATTATCGTCTTTAGAGCCGGTTCGTTTGTGCCAATTCCTGGTATTGACGCAGCTGTATTAGCAGAGCTGTTTGCTC
AGCAAAAAGGTACCATCCTTGGCATGTTCAACATGTTCTCGGGTGGTGCTCTTTCCCGTGCTTCTATCTTTGCATTAGGT
ATCATGCCGTACATTTCGGCATCGATTATCATGCAGTTATTGACTGTGGTGCATCCAGCACTCGCTGAATTGAAAAAAGA
AGGCGAGTCTGGACGTAAAAAAATCAGTCAGTACACACGTTGGGGTACGTTGGTGCTGGGTACATTCCAGTCGATCGGTA
TTGCAACAGGGTTACCAAACTTAGTCCCAGGCCTAGTGGTCAACATTGGATTCGGTTTCTACTTTGTTGCGGTTGTGAGC
TTAGTAACAGGAACCATGTTCCTGATGTGGCTAGGTGAGCAAATTACCGAACGAGGTATAGGTAACGGTATCTCGATTTT
AATTTTCGCAGGTATTGTTGCTGGATTACCTTCCGCTATCGGCCAAACGGCTGAGCAGGCGCGTCAAGGTGACCTGAATG
TGTTAGTATTGTTGTTGCTCGCGGTAATTATTTTTGCTGTGACTTATTTCGTGGTGTTTGTAGAACGTGGTCAACGTCGT
ATCGTTGTTAACTACGCTAAGCGCCAGCAAGGCCGTAAGGTATTCGCTGCGCAATCTACTCACTTGCCGCTGAAAATAAA
CATGGCGGGTGTAATTCCTCCAATTTTTGCGTCAAGCATCATTTTGTTCCCAGGCACACTGGCTCAGTGGTTTGGTCAAA
ATGAGTCTATGTCATGGTTAAGTGATTTTTCACTGGCCGTGTCACCAGGACAACCGCTTTACTCATTATTGTATGCAGCA
GCGATTATCTTCTTCTGTTTCTTCTATACTGCGTTGGTATTTAACCCACGTGAAACAGCAGATAACCTGAAGAAGAGTGG
TGCATTCATCCCTGGGATCCGTCCTGGAGAACAGACTTCGCGTTACATTGATAAAGTAATGACTCGCCTGACATTAGCTG
GCGCGTTATACATTACCTTTATCTGTTTAATTCCGGAGTTCATGTTAATTGCGTGGAAAGTACAGTTCTATTTTGGCGGT
ACTTCACTACTAATTATGGTAGTCGTAATCATGGACTTCATGGCTCAGGTTCAGACCCATATGATGTCACATCAGTATGA
GTCTGTGATGAAGAAAGCTAACCTAGTAAACAAAGCGAACTTAGATCGCTTTGGTCGCTAA

Upstream 100 bases:

>100_bases
ACCATTGAGCGCCCAGTGACCGTAAAAGGTCTCAAGGTAACCAAAGGTGCACGTGCAGCGATTGAAGCTGCTGGCGGTAA
GATCGAGGAATAATACGTCG

Downstream 100 bases:

>100_bases
GTAGCTTTACGGAGTGATGAAATGAAAGTTCGAGCTTCCGTGAAGAAGATCTGCCGTAACTGCAAGATCGTCAAGCGTAG
TGGCGTTGTACGCGTTATCT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MAKPGLDLKSAKGGLSELKARLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFAQQKGTILGMFNMFSGGALSRASIFALG
IMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRWGTLVLGTFQSIGIATGLPNLVPGLVVNIGFGFYFVAVVS
LVTGTMFLMWLGEQITERGIGNGISILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIIFAVTYFVVFVERGQRR
IVVNYAKRQQGRKVFAAQSTHLPLKINMAGVIPPIFASSIILFPGTLAQWFGQNESMSWLSDFSLAVSPGQPLYSLLYAA
AIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMLIAWKVQFYFGG
TSLLIMVVVIMDFMAQVQTHMMSHQYESVMKKANLVNKANLDRFGR

Sequences:

>Translated_446_residues
MAKPGLDLKSAKGGLSELKARLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFAQQKGTILGMFNMFSGGALSRASIFALG
IMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRWGTLVLGTFQSIGIATGLPNLVPGLVVNIGFGFYFVAVVS
LVTGTMFLMWLGEQITERGIGNGISILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIIFAVTYFVVFVERGQRR
IVVNYAKRQQGRKVFAAQSTHLPLKINMAGVIPPIFASSIILFPGTLAQWFGQNESMSWLSDFSLAVSPGQPLYSLLYAA
AIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMLIAWKVQFYFGG
TSLLIMVVVIMDFMAQVQTHMMSHQYESVMKKANLVNKANLDRFGR
>Mature_445_residues
AKPGLDLKSAKGGLSELKARLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFAQQKGTILGMFNMFSGGALSRASIFALGI
MPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRWGTLVLGTFQSIGIATGLPNLVPGLVVNIGFGFYFVAVVSL
VTGTMFLMWLGEQITERGIGNGISILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIIFAVTYFVVFVERGQRRI
VVNYAKRQQGRKVFAAQSTHLPLKINMAGVIPPIFASSIILFPGTLAQWFGQNESMSWLSDFSLAVSPGQPLYSLLYAAA
IIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMLIAWKVQFYFGGT
SLLIMVVVIMDFMAQVQTHMMSHQYESVMKKANLVNKANLDRFGR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=438, Percent_Identity=82.8767123287671, Blast_Score=666, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48641; Mature: 48509

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
AKPGLDLKSAKGGLSELKARLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFAQQKGTIL
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE
GMFNMFSGGALSRASIFALGIMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTR
EEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
WGTLVLGTFQSIGIATGLPNLVPGLVVNIGFGFYFVAVVSLVTGTMFLMWLGEQITERGI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNGISILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIIFAVTYFVVFVERGQRR
CCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IVVNYAKRQQGRKVFAAQSTHLPLKINMAGVIPPIFASSIILFPGTLAQWFGQNESMSWL
EEEEHHHHHCCCEEEEECCCCCCEEEECHHCCCHHHHHHHHHCCCHHHHHCCCCCCHHHH
SDFSLAVSPGQPLYSLLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTS
HHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
RYIDKVMTRLTLAGALYITFICLIPEFMLIAWKVQFYFGGTSLLIMVVVIMDFMAQVQTH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHH
MMSHQYESVMKKANLVNKANLDRFGR
HHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9322765; 10952301 [H]