Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_008577 |
Length | 4,972,204 |
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The map label for this gene is fusA1 [H]
Identifier: 117918654
GI number: 117918654
Start: 239609
End: 241705
Strand: Direct
Name: fusA1 [H]
Synonym: Shewana3_0196
Alternate gene names: 117918654
Gene position: 239609-241705 (Clockwise)
Preceding gene: 117918653
Following gene: 117918655
Centisome position: 4.82
GC content: 48.02
Gene sequence:
>2097_bases GTGGCTCGTACAACCCCAATTGAGCGTTATCGTAATATCGGTATTTGTGCTCATGTGGATGCAGGTAAAACCACCACAAC AGAACGTGTTCTGTTCTATACCGGTTTGTCTCATAAAATCGGTGAGGTGCATGACGGCGCCGCGACCACTGACTGGATGG TACAAGAGCAAGAGCGTGGTATTACTATCACCTCGGCTGCTGTTACTACATTCTGGCGTGGTATGGATGCTCAATTCACT GAACACCGCATCAATATCATCGATACCCCTGGTCACGTTGACTTCACTATTGAAGTTGAACGTTCTTTGCGCGTTCTCGA CGGCGCTGTCGTGGTTTTCTGTGGTTCTTCAGGTGTTGAACCTCAATCAGAAACCGTTTGGCGTCAAGCTGACAAATACC GCGTTCCACGCTTAGTGTTTGTTAACAAGATGGACCGCGCAGGTGCGGACTTTGAACGTGTAGTGAAGCAAATCAGAACT CGCCTAGGAGCGACTTGTGTGCCTATTCAACTGAATATCGGTGCAGAAGAAAACTTCACTGGCGTGATCGACTTAATCAA GATGAAAGCCATTAACTGGAACGAAGCGGACCAGGGTATGACTTTCTCTTATGAAGAGATCCCTGCAGAGTTAGCCGATA AAGCGGCTGAAATGCATGAGTATCTGGTTGAGGCAGCAGCCGAGGCCTCGGATGAACTGATGGACAAGTACCTTGAAGAA GGCACACTGTCAGAAGACGAGATCAAAAAGGCACTGCGTCAGCGTACTATTAATAATGAAATCGTTTTAGCGACCTGTGG TTCTGCATTTAAGAACAAAGGCGTTCAAGCGGTTCTTGATGCGGTTGTGGAATTCTTGCCAGCCCCTGTCGATGTGCCTC CAATTAAGGGCATTGATGACGATGAGCAAGAAGTTGAGCGCCCATCAGATGACAATGCCCCCTTTGCGGCGTTGGCATTT AAGATTGCTACAGACCCGTTCGTGGGCACTTTGACCTTTATTCGCGTGTACTCTGGCGTACTCGAATCAGGTTCTGGCGT TTATAACTCTGTTAAACAGAAGCGTGAACGTATCGGCCGTATCGTGCAAATGCACGCTAACGACCGTACCGAACTGAAAG AAGTACGTGCAGGTGATATCGCTGCGGCTATCGGTCTGAAAGAAGTCACCACGGGTGATACACTTTGTGATCCTGATCAC AAGGTGATCTTGGAACGCATGGAGTTCCCTGAGCCAGTAATTACCATTGCCGTTGAGCCTAAGTCTAAAGCGGACCAAGA TAAAATGGGTATCGCGCTGCAAAAACTTGCAGCGGAAGATCCATCTTTCCGGGTTGAGACTGACGAAGAATCATCACAAA CACTGATTTCTGGAATGGGTGAGTTACACTTAGACATTATCGTTGACCGTATGCGTCGCGAATTTGGTGTTGAGTGTAAC GTTGGTAAGCCACAAGTGGCCTACCGCGAAACCATTCGCGCATCAGTCGAGGCTGAAGGTAAATTTGTACGCCAATCAGG TGGCCGTGGACAATTCGGTCATGTTTGGTTAAAACTAGAGCCTAATGAAGAAGGCGCTGGTTACGAATTTACCAACGCGA TCGTTGGGGGTGTCGTTCCACGTGAATTCATTCCTGCGGTTGATAAAGGTATCCAAGAGCAGATGAAGAACGGTGTTCTC GCCGGCTTCCCTGTGTTGGACGTGAAGGTCACTCTGTTCGACGGTTCATATCACGATGTGGACTCGAATGAAATGGCGTT CAAAATTGCGGGTTCTATGGGCTTCAAAAAGGGTGCGCTCGAAGCGAATCCTGTGTTGCTCGAGCCTTGCATGAAAGTAG AAGTAACTACTCCTGAGAACTACATGGGCGATGTGGTTGGTGACTTAAACCGTCGTCGTGGTTTGATTGAAGGTATGGAT GATGGCTTCGGTGGCATCAAAATAGTCCATGCTGTAGTGCCTCTTTCTGAAATGTTTGGTTATGCAACTGATTTGCGTTC TGCGACTCAGGGTCGTGCTTCCTACTCCATGGAGTTCTTGAAGTACACTGATGCACCGCAAAACATTGCGAAAGCGATTA TTGAATCTCGTAGCTAA
Upstream 100 bases:
>100_bases CTTTGCTCATTACCGTTGGTAATCTGATGGTGTGGGCTTAGGCCCACACCATTGTTGTTGATATTGCCAAGGCACCTGTC TTGGTGGAGAGGGTATAATA
Downstream 100 bases:
>100_bases TTTTAAGTTACGACATAAATGTAATATGGTCCTGTTGATACAGGATTATTCTGAAAAGAAAGGAATATATCGTGGCAAAA GCTAAATTTGAACGTAATAA
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: EF-G 1 [H]
Number of amino acids: Translated: 698; Mature: 697
Protein sequence:
>698_residues MARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATTDWMVQEQERGITITSAAVTTFWRGMDAQFT EHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWRQADKYRVPRLVFVNKMDRAGADFERVVKQIRT RLGATCVPIQLNIGAEENFTGVIDLIKMKAINWNEADQGMTFSYEEIPAELADKAAEMHEYLVEAAAEASDELMDKYLEE GTLSEDEIKKALRQRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPVDVPPIKGIDDDEQEVERPSDDNAPFAALAF KIATDPFVGTLTFIRVYSGVLESGSGVYNSVKQKRERIGRIVQMHANDRTELKEVRAGDIAAAIGLKEVTTGDTLCDPDH KVILERMEFPEPVITIAVEPKSKADQDKMGIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRMRREFGVECN VGKPQVAYRETIRASVEAEGKFVRQSGGRGQFGHVWLKLEPNEEGAGYEFTNAIVGGVVPREFIPAVDKGIQEQMKNGVL AGFPVLDVKVTLFDGSYHDVDSNEMAFKIAGSMGFKKGALEANPVLLEPCMKVEVTTPENYMGDVVGDLNRRRGLIEGMD DGFGGIKIVHAVVPLSEMFGYATDLRSATQGRASYSMEFLKYTDAPQNIAKAIIESRS
Sequences:
>Translated_698_residues MARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATTDWMVQEQERGITITSAAVTTFWRGMDAQFT EHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWRQADKYRVPRLVFVNKMDRAGADFERVVKQIRT RLGATCVPIQLNIGAEENFTGVIDLIKMKAINWNEADQGMTFSYEEIPAELADKAAEMHEYLVEAAAEASDELMDKYLEE GTLSEDEIKKALRQRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPVDVPPIKGIDDDEQEVERPSDDNAPFAALAF KIATDPFVGTLTFIRVYSGVLESGSGVYNSVKQKRERIGRIVQMHANDRTELKEVRAGDIAAAIGLKEVTTGDTLCDPDH KVILERMEFPEPVITIAVEPKSKADQDKMGIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRMRREFGVECN VGKPQVAYRETIRASVEAEGKFVRQSGGRGQFGHVWLKLEPNEEGAGYEFTNAIVGGVVPREFIPAVDKGIQEQMKNGVL AGFPVLDVKVTLFDGSYHDVDSNEMAFKIAGSMGFKKGALEANPVLLEPCMKVEVTTPENYMGDVVGDLNRRRGLIEGMD DGFGGIKIVHAVVPLSEMFGYATDLRSATQGRASYSMEFLKYTDAPQNIAKAIIESRS >Mature_697_residues ARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATTDWMVQEQERGITITSAAVTTFWRGMDAQFTE HRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWRQADKYRVPRLVFVNKMDRAGADFERVVKQIRTR LGATCVPIQLNIGAEENFTGVIDLIKMKAINWNEADQGMTFSYEEIPAELADKAAEMHEYLVEAAAEASDELMDKYLEEG TLSEDEIKKALRQRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPVDVPPIKGIDDDEQEVERPSDDNAPFAALAFK IATDPFVGTLTFIRVYSGVLESGSGVYNSVKQKRERIGRIVQMHANDRTELKEVRAGDIAAAIGLKEVTTGDTLCDPDHK VILERMEFPEPVITIAVEPKSKADQDKMGIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRMRREFGVECNV GKPQVAYRETIRASVEAEGKFVRQSGGRGQFGHVWLKLEPNEEGAGYEFTNAIVGGVVPREFIPAVDKGIQEQMKNGVLA GFPVLDVKVTLFDGSYHDVDSNEMAFKIAGSMGFKKGALEANPVLLEPCMKVEVTTPENYMGDVVGDLNRRRGLIEGMDD GFGGIKIVHAVVPLSEMFGYATDLRSATQGRASYSMEFLKYTDAPQNIAKAIIESRS
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=690, Percent_Identity=43.6231884057971, Blast_Score=553, Evalue=1e-157, Organism=Homo sapiens, GI19923640, Length=718, Percent_Identity=39.1364902506964, Blast_Score=462, Evalue=1e-130, Organism=Homo sapiens, GI25306287, Length=718, Percent_Identity=37.1866295264624, Blast_Score=421, Evalue=1e-117, Organism=Homo sapiens, GI25306283, Length=455, Percent_Identity=40.6593406593407, Blast_Score=316, Evalue=5e-86, Organism=Homo sapiens, GI4503483, Length=469, Percent_Identity=26.4392324093817, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI157426893, Length=202, Percent_Identity=31.1881188118812, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI94966754, Length=138, Percent_Identity=37.6811594202899, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI217272894, Length=140, Percent_Identity=35, Blast_Score=77, Evalue=7e-14, Organism=Homo sapiens, GI217272892, Length=140, Percent_Identity=35, Blast_Score=77, Evalue=7e-14, Organism=Homo sapiens, GI310132016, Length=120, Percent_Identity=36.6666666666667, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI310110807, Length=120, Percent_Identity=36.6666666666667, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI310123363, Length=120, Percent_Identity=36.6666666666667, Blast_Score=74, Evalue=4e-13, Organism=Escherichia coli, GI1789738, Length=703, Percent_Identity=71.977240398293, Blast_Score=1047, Evalue=0.0, Organism=Escherichia coli, GI1790835, Length=489, Percent_Identity=28.8343558282209, Blast_Score=144, Evalue=3e-35, Organism=Escherichia coli, GI48994988, Length=152, Percent_Identity=38.1578947368421, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1788922, Length=158, Percent_Identity=37.9746835443038, Blast_Score=96, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17533571, Length=689, Percent_Identity=40.0580551523948, Blast_Score=493, Evalue=1e-139, Organism=Caenorhabditis elegans, GI17556745, Length=725, Percent_Identity=29.6551724137931, Blast_Score=313, Evalue=3e-85, Organism=Caenorhabditis elegans, GI17552882, Length=803, Percent_Identity=23.6612702366127, Blast_Score=117, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17506493, Length=465, Percent_Identity=27.5268817204301, Blast_Score=107, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17557151, Length=161, Percent_Identity=35.4037267080745, Blast_Score=91, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71988819, Length=147, Percent_Identity=31.9727891156463, Blast_Score=72, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71988811, Length=147, Percent_Identity=31.9727891156463, Blast_Score=71, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323098, Length=691, Percent_Identity=41.6787264833575, Blast_Score=534, Evalue=1e-152, Organism=Saccharomyces cerevisiae, GI6322359, Length=796, Percent_Identity=30.9045226130653, Blast_Score=356, Evalue=5e-99, Organism=Saccharomyces cerevisiae, GI6324707, Length=810, Percent_Identity=27.283950617284, Blast_Score=181, Evalue=4e-46, Organism=Saccharomyces cerevisiae, GI6320593, Length=810, Percent_Identity=27.283950617284, Blast_Score=181, Evalue=4e-46, Organism=Saccharomyces cerevisiae, GI6323320, Length=153, Percent_Identity=33.9869281045752, Blast_Score=88, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6324166, Length=174, Percent_Identity=34.4827586206897, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24582462, Length=703, Percent_Identity=42.3897581792319, Blast_Score=558, Evalue=1e-159, Organism=Drosophila melanogaster, GI221458488, Length=712, Percent_Identity=32.8651685393258, Blast_Score=358, Evalue=6e-99, Organism=Drosophila melanogaster, GI24585711, Length=791, Percent_Identity=27.5600505689001, Blast_Score=185, Evalue=1e-46, Organism=Drosophila melanogaster, GI24585713, Length=791, Percent_Identity=27.5600505689001, Blast_Score=185, Evalue=1e-46, Organism=Drosophila melanogaster, GI24585709, Length=791, Percent_Identity=27.5600505689001, Blast_Score=185, Evalue=1e-46, Organism=Drosophila melanogaster, GI78706572, Length=158, Percent_Identity=35.4430379746835, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI28574573, Length=142, Percent_Identity=37.3239436619718, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357743, Length=136, Percent_Identity=32.3529411764706, Blast_Score=71, Evalue=3e-12,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 76932; Mature: 76801
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATTDWMVQEQERG CCCCCCHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC ITITSAAVTTFWRGMDAQFTEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVE EEEEHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHCCCEEEEEECCCCCC PQSETVWRQADKYRVPRLVFVNKMDRAGADFERVVKQIRTRLGATCVPIQLNIGAEENFT CCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCH GVIDLIKMKAINWNEADQGMTFSYEEIPAELADKAAEMHEYLVEAAAEASDELMDKYLEE HHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GTLSEDEIKKALRQRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPVDVPPIKGIDD CCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC DEQEVERPSDDNAPFAALAFKIATDPFVGTLTFIRVYSGVLESGSGVYNSVKQKRERIGR CHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IVQMHANDRTELKEVRAGDIAAAIGLKEVTTGDTLCDPDHKVILERMEFPEPVITIAVEP EEEECCCCHHHHHHHHCCCHHHHHCCHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECC KSKADQDKMGIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRMRREFGVECN CCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC VGKPQVAYRETIRASVEAEGKFVRQSGGRGQFGHVWLKLEPNEEGAGYEFTNAIVGGVVP CCCCCHHHHHHHHHHHHCCCHHEECCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHCCCC REFIPAVDKGIQEQMKNGVLAGFPVLDVKVTLFDGSYHDVDSNEMAFKIAGSMGFKKGAL HHHHHHHHHHHHHHHHCCCEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC EANPVLLEPCMKVEVTTPENYMGDVVGDLNRRRGLIEGMDDGFGGIKIVHAVVPLSEMFG CCCCEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH YATDLRSATQGRASYSMEFLKYTDAPQNIAKAIIESRS HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCC >Mature Secondary Structure ARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATTDWMVQEQERG CCCCCHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC ITITSAAVTTFWRGMDAQFTEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVE EEEEHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHCCCEEEEEECCCCCC PQSETVWRQADKYRVPRLVFVNKMDRAGADFERVVKQIRTRLGATCVPIQLNIGAEENFT CCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCH GVIDLIKMKAINWNEADQGMTFSYEEIPAELADKAAEMHEYLVEAAAEASDELMDKYLEE HHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GTLSEDEIKKALRQRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPVDVPPIKGIDD CCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC DEQEVERPSDDNAPFAALAFKIATDPFVGTLTFIRVYSGVLESGSGVYNSVKQKRERIGR CHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IVQMHANDRTELKEVRAGDIAAAIGLKEVTTGDTLCDPDHKVILERMEFPEPVITIAVEP EEEECCCCHHHHHHHHCCCHHHHHCCHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECC KSKADQDKMGIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRMRREFGVECN CCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC VGKPQVAYRETIRASVEAEGKFVRQSGGRGQFGHVWLKLEPNEEGAGYEFTNAIVGGVVP CCCCCHHHHHHHHHHHHCCCHHEECCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHCCCC REFIPAVDKGIQEQMKNGVLAGFPVLDVKVTLFDGSYHDVDSNEMAFKIAGSMGFKKGAL HHHHHHHHHHHHHHHHCCCEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC EANPVLLEPCMKVEVTTPENYMGDVVGDLNRRRGLIEGMDDGFGGIKIVHAVVPLSEMFG CCCCEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH YATDLRSATQGRASYSMEFLKYTDAPQNIAKAIIESRS HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA