Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_008577 |
Length | 4,972,204 |
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The map label for this gene is exeJ [H]
Identifier: 117918615
GI number: 117918615
Start: 181314
End: 182081
Strand: Direct
Name: exeJ [H]
Synonym: Shewana3_0157
Alternate gene names: 117918615
Gene position: 181314-182081 (Clockwise)
Preceding gene: 117918614
Following gene: 117918616
Centisome position: 3.65
GC content: 51.3
Gene sequence:
>768_bases ATGTCCTTAAAACAAACTAAGGCTCATAAGGGATTTACCCTGCTGGAAATGCTGATCGCGATTGCGATTTTTGCCATGTT AGGTTTAGCCGCCAATGCGGTACTTAGCACTGTGCTGACCAACGATGAAGTGACCCGTAACTTCTCGGTGCGTTTAAAGG CATTGCAGCAGGGCTTTGGCGCGATTGAGCGCGACCTTGGGCAGATGGTGGCGCGGACACCCAGATTACTCGAAGGCGGC CGTGGTACCACAGTGTTCCAAACGGGTAACGATATTTTAGATTCGGAATCAGAGGCCTTAGTGTTTTACCGCTTAGGCTG GCTCAACCCCGACGGCTTATTGCCCCGTGGCAGCATACAGTCGGTTGCCTACGTGGTACGCGAAGGAAAATTAGAGCGTT GGTACTTTCCGTATCCCGAGCCCGAATTTGGTGCCGAGCCAATGAAGACTGTGATTATCGACAAGGTGCTCTCGGTCGAG TATTCCTTCTTTATGGAGGACAAATGGGAGCGCAAGGTCGAGGCGACCAAGTTACCCAAAGCCATCGCAATGGAAATTGA GATTGAAGGCTTAGGCAAAATTCAACGTAAGTTTATGTTGCCCTTGGGCGCGGCGGCGCCAGAGAAATCCAATGATGAGG ACAACAAGAACGACAACGCCGATGACAATAAAGACGACAACGGCGACCAAGACAATAATGGCGATGGCTCGGGTAACGGA GAAGAAGACCCCGGCAAAGGTGACCCTGAAAATGAGGATGGCGCATGA
Upstream 100 bases:
>100_bases AAAGAAGTGGTGAAAACCACGGATGATAACTTTCGCATGATCCGCATTAGTGTCAGTGAAGATGAGCGTTATCAGCGTAT TGCAGCACAAGTGAGCAGTT
Downstream 100 bases:
>100_bases TAAGGCGAAATCCTGCTAAACAACGTGGCGTCGCGCTGATTGTGGTGTTGCTGATCGTGGCCATGGTGGTGATTATCGCC ACCAATATTACCAGCCGAAA
Product: general secretion pathway protein J
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MSLKQTKAHKGFTLLEMLIAIAIFAMLGLAANAVLSTVLTNDEVTRNFSVRLKALQQGFGAIERDLGQMVARTPRLLEGG RGTTVFQTGNDILDSESEALVFYRLGWLNPDGLLPRGSIQSVAYVVREGKLERWYFPYPEPEFGAEPMKTVIIDKVLSVE YSFFMEDKWERKVEATKLPKAIAMEIEIEGLGKIQRKFMLPLGAAAPEKSNDEDNKNDNADDNKDDNGDQDNNGDGSGNG EEDPGKGDPENEDGA
Sequences:
>Translated_255_residues MSLKQTKAHKGFTLLEMLIAIAIFAMLGLAANAVLSTVLTNDEVTRNFSVRLKALQQGFGAIERDLGQMVARTPRLLEGG RGTTVFQTGNDILDSESEALVFYRLGWLNPDGLLPRGSIQSVAYVVREGKLERWYFPYPEPEFGAEPMKTVIIDKVLSVE YSFFMEDKWERKVEATKLPKAIAMEIEIEGLGKIQRKFMLPLGAAAPEKSNDEDNKNDNADDNKDDNGDQDNNGDGSGNG EEDPGKGDPENEDGA >Mature_254_residues SLKQTKAHKGFTLLEMLIAIAIFAMLGLAANAVLSTVLTNDEVTRNFSVRLKALQQGFGAIERDLGQMVARTPRLLEGGR GTTVFQTGNDILDSESEALVFYRLGWLNPDGLLPRGSIQSVAYVVREGKLERWYFPYPEPEFGAEPMKTVIIDKVLSVEY SFFMEDKWERKVEATKLPKAIAMEIEIEGLGKIQRKFMLPLGAAAPEKSNDEDNKNDNADDNKDDNGDQDNNGDGSGNGE EDPGKGDPENEDGA
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of the multiple pectic enzymes [H]
COG id: COG4795
COG function: function code U; Type II secretory pathway, component PulJ
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP J family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010055 - InterPro: IPR012902 - InterPro: IPR001120 [H]
Pfam domain/function: PF07963 N_methyl [H]
EC number: NA
Molecular weight: Translated: 28118; Mature: 27987
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKQTKAHKGFTLLEMLIAIAIFAMLGLAANAVLSTVLTNDEVTRNFSVRLKALQQGFG CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH AIERDLGQMVARTPRLLEGGRGTTVFQTGNDILDSESEALVFYRLGWLNPDGLLPRGSIQ HHHHHHHHHHHHCHHHHCCCCCCEEEECCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHH SVAYVVREGKLERWYFPYPEPEFGAEPMKTVIIDKVLSVEYSFFMEDKWERKVEATKLPK HHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AIAMEIEIEGLGKIQRKFMLPLGAAAPEKSNDEDNKNDNADDNKDDNGDQDNNGDGSGNG EEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EEDPGKGDPENEDGA CCCCCCCCCCCCCCC >Mature Secondary Structure SLKQTKAHKGFTLLEMLIAIAIFAMLGLAANAVLSTVLTNDEVTRNFSVRLKALQQGFG CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH AIERDLGQMVARTPRLLEGGRGTTVFQTGNDILDSESEALVFYRLGWLNPDGLLPRGSIQ HHHHHHHHHHHHCHHHHCCCCCCEEEECCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHH SVAYVVREGKLERWYFPYPEPEFGAEPMKTVIIDKVLSVEYSFFMEDKWERKVEATKLPK HHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AIAMEIEIEGLGKIQRKFMLPLGAAAPEKSNDEDNKNDNADDNKDDNGDQDNNGDGSGNG EEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EEDPGKGDPENEDGA CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8407845 [H]