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The map label for this gene is mscM [H]

Identifier: 117918575

GI number: 117918575

Start: 132797

End: 134065

Strand: Direct

Name: mscM [H]

Synonym: Shewana3_0117

Alternate gene names: 117918575

Gene position: 132797-134065 (Clockwise)

Preceding gene: 117918574

Following gene: 117918578

Centisome position: 2.67

GC content: 51.46

Gene sequence:

>1269_bases
GTGGATCAAGAAATTCGCCTTGAAATCTCGGGCTGGTTATCGAGTGTCGGGATCGACAGCCAACCGTCCGACAGCATTTC
AACGAGCATTATGCTGCTTGCCTGTGTGCTGGTGGCGGCCATTGCCTATTTTATTATGCGCCGAGGGGTGATCCGCGCGG
TGAACATGGTGATCCTGCGCTCCAAGGCGACGTGGGACGATGTGTTTATGCGCTATAAAGTGCTCGAAAAGCTGGCGATG
TTAGTCCCCGCGATAGTGCTTAACCTGCTAGTGCCCATTACCTTAACCGAGCACCCCGTGCTTAGCAGTTTAGTCGACCG
TCTATTGAGTATTTGGTTGGTTATCCTGATGATCCGCGCCATTTACGCTGGGCTCGATGCGGTTAATGAGATTTCCGATG
TCAATCTGGTCAGTCGCCGCTTGCCGGTAAAAAGCTTTGTGCAGCTGATTAAACTCTTCCTGTTCTTCGTCGGTCTGATC
GTGTCGATTTCCGTACTGGCGGATCAGTCCCCCGTGTACTTCCTCAGCGGTTTAGGTGTGGCAACGGGTTTTGTGATGTT
AGTGTTCCGCGACACCATTTTGGGCTTTGTGGCGGGCATTCAGCTCGCCGCCAACCGCATGGTGAGCAAGGGCGACTGGA
TCCAAATGGACAAGTACGGCGCTGACGGTGCGGTGGAGGAAGTGTCCTTAACCACGGTCAAAGTGCGTAACTGGGATAAG
ACCATCACCATGATCCCCGCTTATGCCTTAGTGTCGGATGCGTTTCGTAACTGGCGCGGTATGTCTGAATCGGGCGGTCG
CCGTATCAAGCGTGCGGTCAATATCGATATCAACAGCATTAAGTTTTTATCTGAGGAAGAGCGAAATCGCCTCAGTAAAA
TCAATTGCTTGAAAGAGTATTTCCCCGCCAAGATCAGTGAAATTCAAGAGTCGAATGCCAAAGTGTCGGATCTGGACATG
AAGGTCAACGGTCGCCATCTGACCAATGTCGGCACCTTCCGCGCCTATTTGCAGGAGTACCTGCAACGCCACGATAAAGT
ACATAAGGATATGACCCTGATGGTGCGCCAACTGGCCCCCACGACCGAAGGTTTACCGATAGAGATTTATATCTTTACCA
ATGACACCCGTTGGGCTTTTTATGAGGCGATACAAGCGGATATCTTCGACCATATCTTTGCCGTATTGCCCGAGTTTGGT
TTACAGGCCTTCCAAGCGCCGACAGGCAACGATATCCGCAGTCTAAAATCGGTGAAAGTCGAGGGCTAA

Upstream 100 bases:

>100_bases
AGGTTCAATCGTGAGCGCGTCATGCTCTCGCAACCTTATGGTTTTATCTTGGGATGGCTTGATTGGGCAGATAATCCAGC
CGTTTCTCTAGGAGTAGATT

Downstream 100 bases:

>100_bases
TCTAATCCCGACTGACTAAGATGGCGGCGAGGGTGAGAAATACGCCGCCGCTGGTACGGTCAAACCAATGCAGTTTGTTG
CTGGCCTTTAGGCTCGGGGC

Product: mechanosensitive ion channel protein MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MDQEIRLEISGWLSSVGIDSQPSDSISTSIMLLACVLVAAIAYFIMRRGVIRAVNMVILRSKATWDDVFMRYKVLEKLAM
LVPAIVLNLLVPITLTEHPVLSSLVDRLLSIWLVILMIRAIYAGLDAVNEISDVNLVSRRLPVKSFVQLIKLFLFFVGLI
VSISVLADQSPVYFLSGLGVATGFVMLVFRDTILGFVAGIQLAANRMVSKGDWIQMDKYGADGAVEEVSLTTVKVRNWDK
TITMIPAYALVSDAFRNWRGMSESGGRRIKRAVNIDINSIKFLSEEERNRLSKINCLKEYFPAKISEIQESNAKVSDLDM
KVNGRHLTNVGTFRAYLQEYLQRHDKVHKDMTLMVRQLAPTTEGLPIEIYIFTNDTRWAFYEAIQADIFDHIFAVLPEFG
LQAFQAPTGNDIRSLKSVKVEG

Sequences:

>Translated_422_residues
MDQEIRLEISGWLSSVGIDSQPSDSISTSIMLLACVLVAAIAYFIMRRGVIRAVNMVILRSKATWDDVFMRYKVLEKLAM
LVPAIVLNLLVPITLTEHPVLSSLVDRLLSIWLVILMIRAIYAGLDAVNEISDVNLVSRRLPVKSFVQLIKLFLFFVGLI
VSISVLADQSPVYFLSGLGVATGFVMLVFRDTILGFVAGIQLAANRMVSKGDWIQMDKYGADGAVEEVSLTTVKVRNWDK
TITMIPAYALVSDAFRNWRGMSESGGRRIKRAVNIDINSIKFLSEEERNRLSKINCLKEYFPAKISEIQESNAKVSDLDM
KVNGRHLTNVGTFRAYLQEYLQRHDKVHKDMTLMVRQLAPTTEGLPIEIYIFTNDTRWAFYEAIQADIFDHIFAVLPEFG
LQAFQAPTGNDIRSLKSVKVEG
>Mature_422_residues
MDQEIRLEISGWLSSVGIDSQPSDSISTSIMLLACVLVAAIAYFIMRRGVIRAVNMVILRSKATWDDVFMRYKVLEKLAM
LVPAIVLNLLVPITLTEHPVLSSLVDRLLSIWLVILMIRAIYAGLDAVNEISDVNLVSRRLPVKSFVQLIKLFLFFVGLI
VSISVLADQSPVYFLSGLGVATGFVMLVFRDTILGFVAGIQLAANRMVSKGDWIQMDKYGADGAVEEVSLTTVKVRNWDK
TITMIPAYALVSDAFRNWRGMSESGGRRIKRAVNIDINSIKFLSEEERNRLSKINCLKEYFPAKISEIQESNAKVSDLDM
KVNGRHLTNVGTFRAYLQEYLQRHDKVHKDMTLMVRQLAPTTEGLPIEIYIFTNDTRWAFYEAIQADIFDHIFAVLPEFG
LQAFQAPTGNDIRSLKSVKVEG

Specific function: Mechanosensitive channel of miniconductance that confers protection against mild hypoosmotic shock. Overexpression confers protection against severe shocks [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1786791, Length=393, Percent_Identity=45.8015267175573, Blast_Score=363, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 47464; Mature: 47464

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQEIRLEISGWLSSVGIDSQPSDSISTSIMLLACVLVAAIAYFIMRRGVIRAVNMVILR
CCCEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SKATWDDVFMRYKVLEKLAMLVPAIVLNLLVPITLTEHPVLSSLVDRLLSIWLVILMIRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
IYAGLDAVNEISDVNLVSRRLPVKSFVQLIKLFLFFVGLIVSISVLADQSPVYFLSGLGV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ATGFVMLVFRDTILGFVAGIQLAANRMVSKGDWIQMDKYGADGAVEEVSLTTVKVRNWDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHEEEEEEEEECCCC
TITMIPAYALVSDAFRNWRGMSESGGRRIKRAVNIDINSIKFLSEEERNRLSKINCLKEY
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
FPAKISEIQESNAKVSDLDMKVNGRHLTNVGTFRAYLQEYLQRHDKVHKDMTLMVRQLAP
HHHHHHHHHHCCCCEEECEEEECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TTEGLPIEIYIFTNDTRWAFYEAIQADIFDHIFAVLPEFGLQAFQAPTGNDIRSLKSVKV
CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
EG
CC
>Mature Secondary Structure
MDQEIRLEISGWLSSVGIDSQPSDSISTSIMLLACVLVAAIAYFIMRRGVIRAVNMVILR
CCCEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SKATWDDVFMRYKVLEKLAMLVPAIVLNLLVPITLTEHPVLSSLVDRLLSIWLVILMIRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
IYAGLDAVNEISDVNLVSRRLPVKSFVQLIKLFLFFVGLIVSISVLADQSPVYFLSGLGV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ATGFVMLVFRDTILGFVAGIQLAANRMVSKGDWIQMDKYGADGAVEEVSLTTVKVRNWDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHEEEEEEEEECCCC
TITMIPAYALVSDAFRNWRGMSESGGRRIKRAVNIDINSIKFLSEEERNRLSKINCLKEY
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
FPAKISEIQESNAKVSDLDMKVNGRHLTNVGTFRAYLQEYLQRHDKVHKDMTLMVRQLAP
HHHHHHHHHHCCCCEEECEEEECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TTEGLPIEIYIFTNDTRWAFYEAIQADIFDHIFAVLPEFGLQAFQAPTGNDIRSLKSVKV
CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
EG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7813889 [H]