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The map label for this gene is cytR [H]

Identifier: 117918524

GI number: 117918524

Start: 75834

End: 76862

Strand: Direct

Name: cytR [H]

Synonym: Shewana3_0065

Alternate gene names: 117918524

Gene position: 75834-76862 (Clockwise)

Preceding gene: 117918523

Following gene: 117918526

Centisome position: 1.53

GC content: 47.52

Gene sequence:

>1029_bases
ATGACAACTAAAAACTGGACTTTAAAGAGCATAGCTAACGAGCTAGGTGTCTCTAACGCCACTGTTTCTAATGCTTTTAA
TCGTCCCGATCAGCTATCGGAAAAACGTCGCAACGAGATTTTAGCCGCCTGCTCTAAACTGGGGTATTTTGGCCCAAACA
AGGCGGCGCAGTCCCTACGTAGGGGCAAATTTGATACCGTCGCGCTGGTACTGTCCGATAGTGTTGAATATATGGTGTCC
GATCCTGTCGCCAGTAAGTTTATGAAGGGGGTGGCTTCGGTATTGGAGCGGGAAAAACTCAACTTACTGCTATTTTCTGG
CAGCTCCGACAGTGTGAATGCGGTGGCCGATTTTGTGGATGGGTTTATTTGTTATGGTCGCCCGCGCAATGCCTTGCTCG
CCGAGCAATTAAAACAGGTTAAGAAGAAGGTGGTTACAGTGGACTTTGATATCCACCGCAACGCTTCTGTCAGCATTGAC
AATAAGTTAGCCGCCTATGAGGTGGCAAAATTGGCGTTAAAATCTCCCTCCGATCAAGTTGCAATATTGGGATTGAGGCT
ACTCGATACCCATTTAACTTGCCGAGTTTACGATTTGAATTTGCTCGAAATCGATATGTCGATTGCGCACCAGAGGTTGC
AGGGATATTTACAGGCGATTGAGGAAACGGGTGTCACCCTTGGTAATGATCGGATTTGGAATATTCCAGAAAGTAATGCG
GAGTATGCGCGGATTGCGGCCAAGGAGGCATTAAACTCAACCCCAAGACCCAATGTATTTTTATGTATGAGCGACTTAAT
TGCCCTCAGCGTGCTGGGTGAGGCGCAGGCCATGGGATTAGCGATTCCGGAGGATATTCGTGTCGTGGGATTTGATGGTA
TTGATGAGGCGACTCGCTCAACTCCACCACTGACCACGGTTTACCAATACTCGGAACAAAAAGGCCAAATGGCAGCGCAG
ATGTTTATCGACGATGCCGTGCATGCTCAGGTATTAGGGTATGAACTACGTTTAGGCAAAAGCTGTTAA

Upstream 100 bases:

>100_bases
GATCATGAGTAGATTTGTTGGTGCACGACGGATTTAAGCTGTGTAGTATTTGCGGTAGGTTAGCTTCCGCTGTGACCCCA
TTCTTTGCCAGGAATTCTGC

Downstream 100 bases:

>100_bases
TACAATCAGTTTTATATGCAAAAGGCGCTAATTAAGCGCCTTTTGTTTTTGTTCTGCATTAGGCCTGTGCTTGAGTGAGC
AGGTCTGCTAATGCGATTTG

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTTKNWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNEILAACSKLGYFGPNKAAQSLRRGKFDTVALVLSDSVEYMVS
DPVASKFMKGVASVLEREKLNLLLFSGSSDSVNAVADFVDGFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSID
NKLAAYEVAKLALKSPSDQVAILGLRLLDTHLTCRVYDLNLLEIDMSIAHQRLQGYLQAIEETGVTLGNDRIWNIPESNA
EYARIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLAIPEDIRVVGFDGIDEATRSTPPLTTVYQYSEQKGQMAAQ
MFIDDAVHAQVLGYELRLGKSC

Sequences:

>Translated_342_residues
MTTKNWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNEILAACSKLGYFGPNKAAQSLRRGKFDTVALVLSDSVEYMVS
DPVASKFMKGVASVLEREKLNLLLFSGSSDSVNAVADFVDGFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSID
NKLAAYEVAKLALKSPSDQVAILGLRLLDTHLTCRVYDLNLLEIDMSIAHQRLQGYLQAIEETGVTLGNDRIWNIPESNA
EYARIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLAIPEDIRVVGFDGIDEATRSTPPLTTVYQYSEQKGQMAAQ
MFIDDAVHAQVLGYELRLGKSC
>Mature_341_residues
TTKNWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNEILAACSKLGYFGPNKAAQSLRRGKFDTVALVLSDSVEYMVSD
PVASKFMKGVASVLEREKLNLLLFSGSSDSVNAVADFVDGFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSIDN
KLAAYEVAKLALKSPSDQVAILGLRLLDTHLTCRVYDLNLLEIDMSIAHQRLQGYLQAIEETGVTLGNDRIWNIPESNAE
YARIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLAIPEDIRVVGFDGIDEATRSTPPLTTVYQYSEQKGQMAAQM
FIDDAVHAQVLGYELRLGKSC

Specific function: This protein negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins. Binds cytidine and adenosine as effectors [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=344, Percent_Identity=26.7441860465116, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787948, Length=347, Percent_Identity=23.0547550432277, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787580, Length=299, Percent_Identity=23.4113712374582, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994940, Length=351, Percent_Identity=23.6467236467236, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790715, Length=357, Percent_Identity=23.5294117647059, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37524; Mature: 37393

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKNWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNEILAACSKLGYFGPNKAAQSLR
CCCCCCHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RGKFDTVALVLSDSVEYMVSDPVASKFMKGVASVLEREKLNLLLFSGSSDSVNAVADFVD
CCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHC
GFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSIDNKLAAYEVAKLALKSPSDQV
CEEEECCCCCHHHHHHHHHHHHHEEEEEEEECCCCCEEECCHHHHHHHHHHHHCCCCCCE
AILGLRLLDTHLTCRVYDLNLLEIDMSIAHQRLQGYLQAIEETGVTLGNDRIWNIPESNA
EEEHHHHHCCCEEEEEEECEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCCC
EYARIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLAIPEDIRVVGFDGIDEATRS
HHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHCC
TPPLTTVYQYSEQKGQMAAQMFIDDAVHAQVLGYELRLGKSC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
>Mature Secondary Structure 
TTKNWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNEILAACSKLGYFGPNKAAQSLR
CCCCCHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RGKFDTVALVLSDSVEYMVSDPVASKFMKGVASVLEREKLNLLLFSGSSDSVNAVADFVD
CCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHC
GFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSIDNKLAAYEVAKLALKSPSDQV
CEEEECCCCCHHHHHHHHHHHHHEEEEEEEECCCCCEEECCHHHHHHHHHHHHCCCCCCE
AILGLRLLDTHLTCRVYDLNLLEIDMSIAHQRLQGYLQAIEETGVTLGNDRIWNIPESNA
EEEHHHHHCCCEEEEEEECEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCCC
EYARIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLAIPEDIRVVGFDGIDEATRS
HHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHCC
TPPLTTVYQYSEQKGQMAAQMFIDDAVHAQVLGYELRLGKSC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]