Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

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The map label for this gene is 117621812

Identifier: 117621812

GI number: 117621812

Start: 11916

End: 12974

Strand: Direct

Name: 117621812

Synonym: BAPKO_4512

Alternate gene names: NA

Gene position: 11916-12974 (Clockwise)

Preceding gene: 117621811

Following gene: 117621813

Centisome position: 41.76

GC content: 29.08

Gene sequence:

>1059_bases
ATGAAAATTAAAAGTAAATGCTTAGCTTTGGGATTGCTTTTTGGTTTTATCAGTTGTGATTTATTCATAAGAGATGAAAT
AAAAGAGAAATCTCTTGGCTTGTGTGATGAGGAAAGTTCTATTTTAGAGACTGGTGACAAATCTGTTAAAAAGTCTCTTA
ATAAGAAAGGCAAAGATAAGGTTGCTAGAAAGAAAGTTGAAGGTAATGCTGTTAAAAAAGACCCGTTTAATCATCATGTA
AAGAGGGAGTCTGTTAATAATAGTAATCTATCACAAAAAAATGTGATATCGGAAGAAGAAATTTTGAAAACTAAATTATT
AAGAGAACGACCTGAGACTAGAAAAGAAGAAATACAAAAACAGCAAGATGAGCATAAAAGGATGCTTCAAGGAAGTTTAA
GTTTTCTTAGTGGTGAAAGTGGTGAATTGAAGGATACTATTGAAAGCAATGAAATTGATTTTACTATAGATTCTGATTTA
AGACTGAAGAGTGATTTACAAGCTATTTCAGGCTCAAATTCTATTTCATATACTGATGAAATAGAAGAAGAAGATTATGA
TCAGTATTCTTTAGAAGAAGATTATTATTATGATGAGGAAACAAGATTAAGTAATAGATATGAATCTTATCTAGAGGGTG
TTAAATATAATGTAAGTTCAGCAATTAAAACAATTGTTAAGATATATGATAATTATACCTTACTTTCAACAAAGCAAACC
CAAATGTATTCTACACGTCTTGACAACCTTGCTAAAGCCAAAGCTAGAGAAGAAGCTAAAAAGTTTACAAAAGAAGAACT
TGAAAAAGATCTTAAGACCTTATTGAACTATATTCAAGTGAGTGCAAGGACTGCGACAAATTTTGTATATGCAAGAGAAA
TATATTCAAAAAGAAAATTAGATGCCATTGAAACAGAAATAAAAAATTTAGTTTTAAAGATCAAAGGACAATCTGATTTA
TACGAGGCATATAAAGCAATAGTAAGGTCAATCTTATTAATGAAAGATTCTCTTAAAATAATCGAAATAGTCATTGATAA
GAATGGTGTTTGGTACTAA

Upstream 100 bases:

>100_bases
AATTGTGTAATTTTATCTCTTTTAATAAGAAAGGTTTATTAATTTTTGGAATCCAGCTTAAATGATTTAAAGTTAATATT
AAATTTAAAGGAGAGAAAGC

Downstream 100 bases:

>100_bases
TCTTTGATAATTAGTTTATTTTTTAAACAGGCTACATATTATTGTAGCCTGTTTAACATTAAATAAAAAAAGCTCTAGTT
GTAAAAAGTATTATGGATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDKVARKKVEGNAVKKDPFNHHV
KRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQKQQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDL
RLKSDLQAISGSNSISYTDEIEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT
QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKLDAIETEIKNLVLKIKGQSDL
YEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY

Sequences:

>Translated_352_residues
MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDKVARKKVEGNAVKKDPFNHHV
KRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQKQQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDL
RLKSDLQAISGSNSISYTDEIEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT
QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKLDAIETEIKNLVLKIKGQSDL
YEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY
>Mature_352_residues
MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDKVARKKVEGNAVKKDPFNHHV
KRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQKQQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDL
RLKSDLQAISGSNSISYTDEIEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT
QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKLDAIETEIKNLVLKIKGQSDL
YEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40715; Mature: 40715

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHCCHHH
VARKKVEGNAVKKDPFNHHVKRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQK
HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
QQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDLRLKSDLQAISGSNSISYTDE
HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHH
IEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHH
QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAIETEIKNLVLKIKGQSDLYEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY
HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHCCHHH
VARKKVEGNAVKKDPFNHHVKRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQK
HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
QQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDLRLKSDLQAISGSNSISYTDE
HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHH
IEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHH
QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAIETEIKNLVLKIKGQSDLYEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY
HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA