Definition | Borrelia afzelii PKo plasmid lp28, complete sequence. |
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Accession | NC_008568 |
Length | 28,533 |
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The map label for this gene is 117621812
Identifier: 117621812
GI number: 117621812
Start: 11916
End: 12974
Strand: Direct
Name: 117621812
Synonym: BAPKO_4512
Alternate gene names: NA
Gene position: 11916-12974 (Clockwise)
Preceding gene: 117621811
Following gene: 117621813
Centisome position: 41.76
GC content: 29.08
Gene sequence:
>1059_bases ATGAAAATTAAAAGTAAATGCTTAGCTTTGGGATTGCTTTTTGGTTTTATCAGTTGTGATTTATTCATAAGAGATGAAAT AAAAGAGAAATCTCTTGGCTTGTGTGATGAGGAAAGTTCTATTTTAGAGACTGGTGACAAATCTGTTAAAAAGTCTCTTA ATAAGAAAGGCAAAGATAAGGTTGCTAGAAAGAAAGTTGAAGGTAATGCTGTTAAAAAAGACCCGTTTAATCATCATGTA AAGAGGGAGTCTGTTAATAATAGTAATCTATCACAAAAAAATGTGATATCGGAAGAAGAAATTTTGAAAACTAAATTATT AAGAGAACGACCTGAGACTAGAAAAGAAGAAATACAAAAACAGCAAGATGAGCATAAAAGGATGCTTCAAGGAAGTTTAA GTTTTCTTAGTGGTGAAAGTGGTGAATTGAAGGATACTATTGAAAGCAATGAAATTGATTTTACTATAGATTCTGATTTA AGACTGAAGAGTGATTTACAAGCTATTTCAGGCTCAAATTCTATTTCATATACTGATGAAATAGAAGAAGAAGATTATGA TCAGTATTCTTTAGAAGAAGATTATTATTATGATGAGGAAACAAGATTAAGTAATAGATATGAATCTTATCTAGAGGGTG TTAAATATAATGTAAGTTCAGCAATTAAAACAATTGTTAAGATATATGATAATTATACCTTACTTTCAACAAAGCAAACC CAAATGTATTCTACACGTCTTGACAACCTTGCTAAAGCCAAAGCTAGAGAAGAAGCTAAAAAGTTTACAAAAGAAGAACT TGAAAAAGATCTTAAGACCTTATTGAACTATATTCAAGTGAGTGCAAGGACTGCGACAAATTTTGTATATGCAAGAGAAA TATATTCAAAAAGAAAATTAGATGCCATTGAAACAGAAATAAAAAATTTAGTTTTAAAGATCAAAGGACAATCTGATTTA TACGAGGCATATAAAGCAATAGTAAGGTCAATCTTATTAATGAAAGATTCTCTTAAAATAATCGAAATAGTCATTGATAA GAATGGTGTTTGGTACTAA
Upstream 100 bases:
>100_bases AATTGTGTAATTTTATCTCTTTTAATAAGAAAGGTTTATTAATTTTTGGAATCCAGCTTAAATGATTTAAAGTTAATATT AAATTTAAAGGAGAGAAAGC
Downstream 100 bases:
>100_bases TCTTTGATAATTAGTTTATTTTTTAAACAGGCTACATATTATTGTAGCCTGTTTAACATTAAATAAAAAAAGCTCTAGTT GTAAAAAGTATTATGGATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDKVARKKVEGNAVKKDPFNHHV KRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQKQQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDL RLKSDLQAISGSNSISYTDEIEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKLDAIETEIKNLVLKIKGQSDL YEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY
Sequences:
>Translated_352_residues MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDKVARKKVEGNAVKKDPFNHHV KRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQKQQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDL RLKSDLQAISGSNSISYTDEIEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKLDAIETEIKNLVLKIKGQSDL YEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY >Mature_352_residues MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDKVARKKVEGNAVKKDPFNHHV KRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQKQQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDL RLKSDLQAISGSNSISYTDEIEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKLDAIETEIKNLVLKIKGQSDL YEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40715; Mature: 40715
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHCCHHH VARKKVEGNAVKKDPFNHHVKRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQK HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHH QQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDLRLKSDLQAISGSNSISYTDE HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHH IEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHH QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAIETEIKNLVLKIKGQSDLYEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC >Mature Secondary Structure MKIKSKCLALGLLFGFISCDLFIRDEIKEKSLGLCDEESSILETGDKSVKKSLNKKGKDK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHCCHHH VARKKVEGNAVKKDPFNHHVKRESVNNSNLSQKNVISEEEILKTKLLRERPETRKEEIQK HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHH QQDEHKRMLQGSLSFLSGESGELKDTIESNEIDFTIDSDLRLKSDLQAISGSNSISYTDE HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHH IEEEDYDQYSLEEDYYYDEETRLSNRYESYLEGVKYNVSSAIKTIVKIYDNYTLLSTKQT CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHH QMYSTRLDNLAKAKAREEAKKFTKEELEKDLKTLLNYIQVSARTATNFVYAREIYSKRKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAIETEIKNLVLKIKGQSDLYEAYKAIVRSILLMKDSLKIIEIVIDKNGVWY HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA