Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

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The map label for this gene is 117621802

Identifier: 117621802

GI number: 117621802

Start: 1398

End: 1670

Strand: Reverse

Name: 117621802

Synonym: BAPKO_4502

Alternate gene names: NA

Gene position: 1670-1398 (Counterclockwise)

Preceding gene: 117621803

Following gene: 117621801

Centisome position: 5.85

GC content: 26.74

Gene sequence:

>273_bases
ATGCCTATAAGTAAAGAGGTTGATTTGGAAGAAATCATTAAACAAAATGTTGGTAAATCTAAATTTGCTTTTCGTGTTGA
CAATGATGTTATTAGTAATAACACATCAAATGTTAAGCCTGGTAGATCAAAGATGACGATCAAACAAATAAGTATAGGAT
TGAAATATGAATATTGGGTTGAGTTTTATTCTATTTTAGATAAAAAGGGATTAACAGCTTCTGGTTTTATAAGAACTTTA
ATTATGGAATATATAGAAACTTCTAAGAAATAA

Upstream 100 bases:

>100_bases
ATGCTAAAATAGCAGAATCGCAGTTGTATAAAAAGTCGATTTTTGATTATTATCCTGAGAGTAAATCTATCTTAGAACTT
TCAAGATTGGGGGATGCTTT

Downstream 100 bases:

>100_bases
TATTTTTTAGTTTTAATTTATTATTTATTAATAGATGGATTTATTTTGATTTTGAATATATTTTTTGATGATATCAATAG
AAGCGCTTACAGTAGAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MPISKEVDLEEIIKQNVGKSKFAFRVDNDVISNNTSNVKPGRSKMTIKQISIGLKYEYWVEFYSILDKKGLTASGFIRTL
IMEYIETSKK

Sequences:

>Translated_90_residues
MPISKEVDLEEIIKQNVGKSKFAFRVDNDVISNNTSNVKPGRSKMTIKQISIGLKYEYWVEFYSILDKKGLTASGFIRTL
IMEYIETSKK
>Mature_89_residues
PISKEVDLEEIIKQNVGKSKFAFRVDNDVISNNTSNVKPGRSKMTIKQISIGLKYEYWVEFYSILDKKGLTASGFIRTLI
MEYIETSKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10353; Mature: 10222

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISKEVDLEEIIKQNVGKSKFAFRVDNDVISNNTSNVKPGRSKMTIKQISIGLKYEYWV
CCCCCCCCHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
EFYSILDKKGLTASGFIRTLIMEYIETSKK
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PISKEVDLEEIIKQNVGKSKFAFRVDNDVISNNTSNVKPGRSKMTIKQISIGLKYEYWV
CCCCCCCHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
EFYSILDKKGLTASGFIRTLIMEYIETSKK
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8932323; 9403685 [H]