Definition | Borrelia afzelii PKo plasmid lp60-2, complete sequence. |
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Accession | NC_008565 |
Length | 59,804 |
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The map label for this gene is 117621704
Identifier: 117621704
GI number: 117621704
Start: 58340
End: 58684
Strand: Direct
Name: 117621704
Synonym: BAPKO_2557
Alternate gene names: NA
Gene position: 58340-58684 (Clockwise)
Preceding gene: 117621703
Following gene: 117621705
Centisome position: 97.55
GC content: 29.86
Gene sequence:
>345_bases ATGTCAAAAGCTTTTGACGAAATATATTGCCATTCTTGTGGCAAGCCTATTAAAAAAGAAGCTGAAATTTGTATTGCTTG TGGAGTTAAAAACAAACAAGTTAAAAAATCTTATAATAGATTAGTGGCGGGGTTATTATGCTTATTTTTGGGTTATTTAG GGGCTCATAGATTTTATGTGGGAAAAATGGGGACCGGTACTACGTTTTTATGTATAATGCTTATTTCCCCTGTATTTTAC CTATTTACCCTAGGTTTTGGATTAATAATTATTTTGCCCGTATTAGCAATACTAGAAATTATTGTTTTGATTGATTTAAT ACGAATTGTCGTTAATAAATTTTAA
Upstream 100 bases:
>100_bases TGTCGCTCTATATTTATAATGTTTATCAAATATAAAAATACAACTTACTTATCTCAATATATTTTATATACGTATATTGT ATTTTTAAAGGAGATTAATC
Downstream 100 bases:
>100_bases AAAAGAATAATTTGATTAAAATTTTTAGCTTTTGGTAAAATATAAATTGCAATTTTTATCTATATTAAAGTCGTCTACTT TTTAATATGTGTGTCTTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 114; Mature: 113
Protein sequence:
>114_residues MSKAFDEIYCHSCGKPIKKEAEICIACGVKNKQVKKSYNRLVAGLLCLFLGYLGAHRFYVGKMGTGTTFLCIMLISPVFY LFTLGFGLIIILPVLAILEIIVLIDLIRIVVNKF
Sequences:
>Translated_114_residues MSKAFDEIYCHSCGKPIKKEAEICIACGVKNKQVKKSYNRLVAGLLCLFLGYLGAHRFYVGKMGTGTTFLCIMLISPVFY LFTLGFGLIIILPVLAILEIIVLIDLIRIVVNKF >Mature_113_residues SKAFDEIYCHSCGKPIKKEAEICIACGVKNKQVKKSYNRLVAGLLCLFLGYLGAHRFYVGKMGTGTTFLCIMLISPVFYL FTLGFGLIIILPVLAILEIIVLIDLIRIVVNKF
Specific function: Unknown
COG id: COG2314
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12707; Mature: 12576
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 5.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKAFDEIYCHSCGKPIKKEAEICIACGVKNKQVKKSYNRLVAGLLCLFLGYLGAHRFYV CCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKMGTGTTFLCIMLISPVFYLFTLGFGLIIILPVLAILEIIVLIDLIRIVVNKF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SKAFDEIYCHSCGKPIKKEAEICIACGVKNKQVKKSYNRLVAGLLCLFLGYLGAHRFYV CCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKMGTGTTFLCIMLISPVFYLFTLGFGLIIILPVLAILEIIVLIDLIRIVVNKF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA