Definition | Borrelia afzelii PKo plasmid lp60-2, complete sequence. |
---|---|
Accession | NC_008565 |
Length | 59,804 |
Click here to switch to the map view.
The map label for this gene is 117621692
Identifier: 117621692
GI number: 117621692
Start: 46660
End: 46971
Strand: Direct
Name: 117621692
Synonym: BAPKO_2545
Alternate gene names: NA
Gene position: 46660-46971 (Clockwise)
Preceding gene: 117621687
Following gene: 117621694
Centisome position: 78.02
GC content: 24.04
Gene sequence:
>312_bases TTGCTAATAGCTAAAAATGATCCCGAGAACTTTAAATATTTACTTTATTTAGAATATTTTAAGTTTAGTGAAGAAGAAAT TGATAGAATATTAAATCTAGATGCCAAAGATAAATTCTTTAAAGAAAAAGAAAATGAAAATAATTTCATTGTAGCCAGTC TTTACTCATTAACTAAAGAAGATTTTATAACTTTGCTTAATGATTTTAAGGTGTTGAAAAATAAAAAAGGAGAAGATTAT ATTTTGTTTTTAATAAAGGGATATGAGAATTATTTACTAGGTGCGAAGAGTTTCAATCGTTGGATTGCATAA
Upstream 100 bases:
>100_bases CTCTTTTTATGTCATTGTTTTGTAAGACTTATATGCATAAATTGCTAATATAATTTTAATTAATTTAATTTTATACTTGA CTTTAGTCAAAAACACTTCC
Downstream 100 bases:
>100_bases TAGATCCCAATTGTCAATTCAAAATCTGGCAATTGGGATCGTAAAGTTAGTATTGCACTTGATTTAATAACTTTTTTTAA ATGATAGTTGGAATCCGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Restriction/
Number of amino acids: Translated: 103; Mature: 103
Protein sequence:
>103_residues MLIAKNDPENFKYLLYLEYFKFSEEEIDRILNLDAKDKFFKEKENENNFIVASLYSLTKEDFITLLNDFKVLKNKKGEDY ILFLIKGYENYLLGAKSFNRWIA
Sequences:
>Translated_103_residues MLIAKNDPENFKYLLYLEYFKFSEEEIDRILNLDAKDKFFKEKENENNFIVASLYSLTKEDFITLLNDFKVLKNKKGEDY ILFLIKGYENYLLGAKSFNRWIA >Mature_103_residues MLIAKNDPENFKYLLYLEYFKFSEEEIDRILNLDAKDKFFKEKENENNFIVASLYSLTKEDFITLLNDFKVLKNKKGEDY ILFLIKGYENYLLGAKSFNRWIA
Specific function: Unknown
COG id: COG1002
COG function: function code V; Type II restriction enzyme, methylase subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12398; Mature: 12398
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIAKNDPENFKYLLYLEYFKFSEEEIDRILNLDAKDKFFKEKENENNFIVASLYSLTKE CCCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCHHHHHHCCCCCCEEEEHHHHHHHH DFITLLNDFKVLKNKKGEDYILFLIKGYENYLLGAKSFNRWIA HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEECCCHHHCCCC >Mature Secondary Structure MLIAKNDPENFKYLLYLEYFKFSEEEIDRILNLDAKDKFFKEKENENNFIVASLYSLTKE CCCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCHHHHHHCCCCCCEEEEHHHHHHHH DFITLLNDFKVLKNKKGEDYILFLIKGYENYLLGAKSFNRWIA HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEECCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA