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The map label for this gene is ybhS [H]

Identifier: 116872321

GI number: 116872321

Start: 933471

End: 934586

Strand: Direct

Name: ybhS [H]

Synonym: lwe0903

Alternate gene names: 116872321

Gene position: 933471-934586 (Clockwise)

Preceding gene: 116872320

Following gene: 116872322

Centisome position: 33.17

GC content: 35.22

Gene sequence:

>1116_bases
ATGCGAATATTTGCTATCATCAAACGAATCGTGAATCAATTTCGTCGAGATAAACGGACACTGGCATTAATGTTTCTTGC
ACCACTGTTACTTATTACTTTACTAACGTATTTATTTGAAGGCGATACAGTGAAGCCAACTGTTGGCGTGAGCGGACTTT
CGGATTCCATGGTAAAAGAACTCAAAAAAAATGACTTAACCTTAAAAAATTATTCTGAAATTACTAATATACCGGATAAA
ATGAAAGAGGCTAACCTCGATGCCTTTTTTAAACAAAATGGTGAAAAAATCGAAGTAACGTATGAAAATAGTGAACCAAG
CTTGAGTAAAGAAATCAGCTTAAAACTACAAAAAACATTAATGACTGAAGCTGAGAAGCAAATACAAACTCAAGCAAAAG
ACACTGGACAAGCACTTGCAAAAGCTGGAATAGACCCAAGTACGATTCCATCACTCACAAAAAAGACGGAACAACTAACT
ATCTCAACAGATTACATTTATGGAGATAAAGATACCAGCTTTTTCGATACCATTAGCCCGATTTTCATTGGCTTTTTTGT
ATTTTTCTTTGTATTTTTAATCGCAGGAATTTCCTTCTTAAGAGAGAGAACGACAGGAACGCTTGAGCGACTGATGGCAA
CACCCATTAAACGAATAGAATTAGAACTCGGTTATTTGATTGGTTTTGGTATTTTTGCTTTGCTACAGTCGATTTTAGTA
GCTGTATTTTCCATTCAAGTGCTTGGAATGATGCAAAATGGCTCGTTATTCTACGTATTACTTATTACTTTAACCCTTGG
AATGGTTGCTCTGGCTCTTGGGATTTTACTTTCCACCTTTGCCAATAATGAATTTCAAATCGTGCAGTTTATTCCCATTG
TTATTGTGCCTCAAGTTCTATTTTGTGGAATTTTTCCTCTAGATGGAATGGCAGACTGGCTCGTATGGGTTGCTCATATT
ATGCCTTTATACTACGGGGCAAACGCTTTAACTTCGATTATGGTAAAAGGAGAAGGATTCGCTTCCTTTGCAAGTGACTT
TTATATTTTACTAGGATTTGTGTTCATATTCGTCGTATTAAATATTTTTGCATTAAAAAAATATCGAAAAGTTTAA

Upstream 100 bases:

>100_bases
ATGGAAAAATAATCGCTGTAGGGACTCCTCTGGCGCTCTCAAGCAAAACCTCATCCGGCAAACTAGAAGATGCTTTTTTA
GAGTTTGGAGGGGAGAACTA

Downstream 100 bases:

>100_bases
TTTGAAAGGAAGAGAAAAGATGGATACAGAAGGAGATATTTTAAGACAAGTTCTCGATTTAACAGAAAAAGATAATAAAA
TGAGCGATAAACAAAAACGT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MRIFAIIKRIVNQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPTVGVSGLSDSMVKELKKNDLTLKNYSEITNIPDK
MKEANLDAFFKQNGEKIEVTYENSEPSLSKEISLKLQKTLMTEAEKQIQTQAKDTGQALAKAGIDPSTIPSLTKKTEQLT
ISTDYIYGDKDTSFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
AVFSIQVLGMMQNGSLFYVLLITLTLGMVALALGILLSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWVAHI
MPLYYGANALTSIMVKGEGFASFASDFYILLGFVFIFVVLNIFALKKYRKV

Sequences:

>Translated_371_residues
MRIFAIIKRIVNQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPTVGVSGLSDSMVKELKKNDLTLKNYSEITNIPDK
MKEANLDAFFKQNGEKIEVTYENSEPSLSKEISLKLQKTLMTEAEKQIQTQAKDTGQALAKAGIDPSTIPSLTKKTEQLT
ISTDYIYGDKDTSFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
AVFSIQVLGMMQNGSLFYVLLITLTLGMVALALGILLSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWVAHI
MPLYYGANALTSIMVKGEGFASFASDFYILLGFVFIFVVLNIFALKKYRKV
>Mature_371_residues
MRIFAIIKRIVNQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPTVGVSGLSDSMVKELKKNDLTLKNYSEITNIPDK
MKEANLDAFFKQNGEKIEVTYENSEPSLSKEISLKLQKTLMTEAEKQIQTQAKDTGQALAKAGIDPSTIPSLTKKTEQLT
ISTDYIYGDKDTSFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
AVFSIQVLGMMQNGSLFYVLLITLTLGMVALALGILLSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWVAHI
MPLYYGANALTSIMVKGEGFASFASDFYILLGFVFIFVVLNIFALKKYRKV

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=367, Percent_Identity=25.0681198910082, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650853, Length=211, Percent_Identity=30.8056872037915, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24650855, Length=211, Percent_Identity=30.8056872037915, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41656; Mature: 41656

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIFAIIKRIVNQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPTVGVSGLSDSMVKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
LKKNDLTLKNYSEITNIPDKMKEANLDAFFKQNGEKIEVTYENSEPSLSKEISLKLQKTL
HHHCCCCHHHHHHHHCCHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH
MTEAEKQIQTQAKDTGQALAKAGIDPSTIPSLTKKTEQLTISTDYIYGDKDTSFFDTISP
HHHHHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHEEEEEEEEEECCCCCCHHHHHHH
IFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVFSIQVLGMMQNGSLFYVLLITLTLGMVALALGILLSTFANNEFQIVQFIPIVIVPQVL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
FCGIFPLDGMADWLVWVAHIMPLYYGANALTSIMVKGEGFASFASDFYILLGFVFIFVVL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
NIFALKKYRKV
HHHHHHHHHCC
>Mature Secondary Structure
MRIFAIIKRIVNQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPTVGVSGLSDSMVKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
LKKNDLTLKNYSEITNIPDKMKEANLDAFFKQNGEKIEVTYENSEPSLSKEISLKLQKTL
HHHCCCCHHHHHHHHCCHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH
MTEAEKQIQTQAKDTGQALAKAGIDPSTIPSLTKKTEQLTISTDYIYGDKDTSFFDTISP
HHHHHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHEEEEEEEEEECCCCCCHHHHHHH
IFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVFSIQVLGMMQNGSLFYVLLITLTLGMVALALGILLSTFANNEFQIVQFIPIVIVPQVL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
FCGIFPLDGMADWLVWVAHIMPLYYGANALTSIMVKGEGFASFASDFYILLGFVFIFVVL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
NIFALKKYRKV
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]