Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
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Accession | NC_008555 |
Length | 2,814,130 |
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The map label for this gene is 116872313
Identifier: 116872313
GI number: 116872313
Start: 923970
End: 925073
Strand: Direct
Name: 116872313
Synonym: lwe0895
Alternate gene names: NA
Gene position: 923970-925073 (Clockwise)
Preceding gene: 116872312
Following gene: 116872314
Centisome position: 32.83
GC content: 34.15
Gene sequence:
>1104_bases ATGGAAATCATCATTTATATTTTTGTAAGTATTGCTATCATTTCACTACAAGCAATGACACCTTTTGTTATACGGAAGTC TGAATGTTTTGGGGTAAATGTTGGCGAGCGAGCTAATCGAAACGCTGAGCTAACCCAATTAAAAAAACAATATATTGGTC AAGTTGTTTTATGGACCTCGTTAGTGGCTATCATCGGGATTGCTTTTATTCAAGGTTTTCATTCAAGCGAAAACATCCAA GCAGGAATTTTTATCGCCTCCATGTTTGGACAATTAATAGTTTCTTTCATTATTTACTATCGTTTTCATCAAACAACCTT ACAATGGAAAAAAGAAAAAATAGAGTCAGGAGAAATTTCAACCAATTCTATTATCATGGTAGATACTAGTTTTCATCGTA GAAAAATGGTGATTTCTTACACTTGGTTTATAGTGCCCTTACTTTTATTTATTATTACACTTGCAATAACCGCTGTTTTT TATCCAAGTGCTCCGGAAACTTGGATAACTCATTTTGATATGAACGGGGTAAGCACAAATACGGTTCAAAAATCACCAAG AATAGCTCTACTTTTCCCAATGCTGCAACTAGGGATGATTGGCTTATTTATGTTTATTAATTATGTTATAGCCAGAAGTA AACAAACAGTAGAAAATGAAAATCCAACAGATTCTTTAAAACGGAATATGTTATTTAGACAAATTTCTAGCAAGGCTATG CTAATTATGTGTATGATCATGGTCATTGATTTTCTCGTTATGCAAGTGGTTATTTTACTCGCATTATCAGCAGAAATTAT GATGATTACTATGATTATTTCCGTCATTTTAATTTTACTGGGAACAGTTCTTCTTGCTGTAAAAGTAGGACAGGGTGGAA GCCGATTAAAATTCGCAAATGAGCCAGACGGAGTAAACAAGCCAATCCGTGATGACGACGTTTTCTGGAAAGCGGGAGTA ATTTACTTCAACAGAAATGACCCAGCATTATTCGTTGAGAAACGTTTTGGTATCGGTTGGACAATAAATACAGCTCGTCC AGTTGCTTGGTTATCTTTTGTATTTGTTATCGTAGTCATTATCTTCATTAGTTTCTTGTTTTAA
Upstream 100 bases:
>100_bases TGATTGCAGAATCAGTTGTTCGTGATGTTAGTGAAGAGAAATGGTTAGAAATAAGTAAGACTATTTTTGATGAAATGCAT GGACGGAGAGTGGATTAGAG
Downstream 100 bases:
>100_bases GTATATTTAAGTTAATAATCAACACTTCCCACAAAAAATTTTCTGGCCCTGAACTCTTGTTTGGGGCTTTTTTATAGTAG CAAGCTTTTTTTGAGTATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MEIIIYIFVSIAIISLQAMTPFVIRKSECFGVNVGERANRNAELTQLKKQYIGQVVLWTSLVAIIGIAFIQGFHSSENIQ AGIFIASMFGQLIVSFIIYYRFHQTTLQWKKEKIESGEISTNSIIMVDTSFHRRKMVISYTWFIVPLLLFIITLAITAVF YPSAPETWITHFDMNGVSTNTVQKSPRIALLFPMLQLGMIGLFMFINYVIARSKQTVENENPTDSLKRNMLFRQISSKAM LIMCMIMVIDFLVMQVVILLALSAEIMMITMIISVILILLGTVLLAVKVGQGGSRLKFANEPDGVNKPIRDDDVFWKAGV IYFNRNDPALFVEKRFGIGWTINTARPVAWLSFVFVIVVIIFISFLF
Sequences:
>Translated_367_residues MEIIIYIFVSIAIISLQAMTPFVIRKSECFGVNVGERANRNAELTQLKKQYIGQVVLWTSLVAIIGIAFIQGFHSSENIQ AGIFIASMFGQLIVSFIIYYRFHQTTLQWKKEKIESGEISTNSIIMVDTSFHRRKMVISYTWFIVPLLLFIITLAITAVF YPSAPETWITHFDMNGVSTNTVQKSPRIALLFPMLQLGMIGLFMFINYVIARSKQTVENENPTDSLKRNMLFRQISSKAM LIMCMIMVIDFLVMQVVILLALSAEIMMITMIISVILILLGTVLLAVKVGQGGSRLKFANEPDGVNKPIRDDDVFWKAGV IYFNRNDPALFVEKRFGIGWTINTARPVAWLSFVFVIVVIIFISFLF >Mature_367_residues MEIIIYIFVSIAIISLQAMTPFVIRKSECFGVNVGERANRNAELTQLKKQYIGQVVLWTSLVAIIGIAFIQGFHSSENIQ AGIFIASMFGQLIVSFIIYYRFHQTTLQWKKEKIESGEISTNSIIMVDTSFHRRKMVISYTWFIVPLLLFIITLAITAVF YPSAPETWITHFDMNGVSTNTVQKSPRIALLFPMLQLGMIGLFMFINYVIARSKQTVENENPTDSLKRNMLFRQISSKAM LIMCMIMVIDFLVMQVVILLALSAEIMMITMIISVILILLGTVLLAVKVGQGGSRLKFANEPDGVNKPIRDDDVFWKAGV IYFNRNDPALFVEKRFGIGWTINTARPVAWLSFVFVIVVIIFISFLF
Specific function: Unknown
COG id: COG4194
COG function: function code R; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41689; Mature: 41689
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIIIYIFVSIAIISLQAMTPFVIRKSECFGVNVGERANRNAELTQLKKQYIGQVVLWTS CEEEHHHHHHHHHHHHHHHCHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LVAIIGIAFIQGFHSSENIQAGIFIASMFGQLIVSFIIYYRFHQTTLQWKKEKIESGEIS HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TNSIIMVDTSFHRRKMVISYTWFIVPLLLFIITLAITAVFYPSAPETWITHFDMNGVSTN CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCCCCCC TVQKSPRIALLFPMLQLGMIGLFMFINYVIARSKQTVENENPTDSLKRNMLFRQISSKAM CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHH LIMCMIMVIDFLVMQVVILLALSAEIMMITMIISVILILLGTVLLAVKVGQGGSRLKFAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCC EPDGVNKPIRDDDVFWKAGVIYFNRNDPALFVEKRFGIGWTINTARPVAWLSFVFVIVVI CCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCEEECCCCHHHHHHHHHHHHHH IFISFLF HHHHHHC >Mature Secondary Structure MEIIIYIFVSIAIISLQAMTPFVIRKSECFGVNVGERANRNAELTQLKKQYIGQVVLWTS CEEEHHHHHHHHHHHHHHHCHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LVAIIGIAFIQGFHSSENIQAGIFIASMFGQLIVSFIIYYRFHQTTLQWKKEKIESGEIS HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TNSIIMVDTSFHRRKMVISYTWFIVPLLLFIITLAITAVFYPSAPETWITHFDMNGVSTN CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCCCCCC TVQKSPRIALLFPMLQLGMIGLFMFINYVIARSKQTVENENPTDSLKRNMLFRQISSKAM CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHH LIMCMIMVIDFLVMQVVILLALSAEIMMITMIISVILILLGTVLLAVKVGQGGSRLKFAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCC EPDGVNKPIRDDDVFWKAGVIYFNRNDPALFVEKRFGIGWTINTARPVAWLSFVFVIVVI CCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCEEECCCCHHHHHHHHHHHHHH IFISFLF HHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA