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The map label for this gene is ydcI [H]

Identifier: 116872299

GI number: 116872299

Start: 911322

End: 913499

Strand: Direct

Name: ydcI [H]

Synonym: lwe0881

Alternate gene names: 116872299

Gene position: 911322-913499 (Clockwise)

Preceding gene: 116872298

Following gene: 116872300

Centisome position: 32.38

GC content: 37.83

Gene sequence:

>2178_bases
ATGGAACAAATGCAAGATAAAATAATAAAATTAGTCCAAAAATCGCTTAGTTATAAACCAGCGCAAATTAATGCCGTTAT
TAAATTAATGGAAGAAGGCAACACGGTCCCATTTATTGCACGTTACCGTAAAGAAATGACTGGTAGCCTAGATGAAGTGG
AAATTCGCGATATTGAAGAAACATTTGAATACGTTACTAAATTAGAAAATCGTAAAGAAGAAATTATTCGCTTAATAGAT
GAACAAGGGAAATTAACAGACGAACTGAGAGCGGCAATCATCCAAGCAGAAAAACACCAAGCATTAGAAGATTTATATCG
CCCCTACAAACAAAAGAAACGCACCAAAGCAACAATTGCCAAAGAAAAAGGATTAGAACCGCTTGCAGATTGGCTAATGA
GCTTTCCAAGCGATGCTGATCCACTGAAAGAAGCAGCAAACTACATTTCAGAAGATAAAGAAGTCGAGACAGCAGAATCA
GCCTTACTTGGCGCACATGAAATTATCGCTGAACAAATCAGTGATGAGCCTAGTTTTCGAGAGTGGATTCGTAATTTTAC
TCGCAAATTTGGCATGATTGAATCTAGAGCAAAAAACGCTGAAGCAGATGAAAAAGGCGTTTACGAAATGTATTATGAAT
TTAACGAAATGATTGGCAAAGTAGCTAGTCACCGCATACTTGCATTTAATCGCGGAGAAAAAGAAGATATTTTACGTGTA
CAAGTACAAGTAGATACAACAAAAATCTTCCAATATTTATTTGAAAAAGTTATCCAAAACCGTAATTCTGCAACACGTCC
TTATGTAGAAGAGGCGATTTTAGATGCTTATAAACGTTTTATCGGACCTGCAATTGAACGTGAAATTCGCGGCGAATTAA
CTGAGAAAGGCGAAGAACAAGCGATTCATATTTTCTCTGAGAACTTGCGCAAATTGCTTCTACAACCACCTTTAAAAGGA
AAAATAATTCTTGGTGTGGATCCAGCTTTTAGAACAGGTTGTAAATTCTCTGTACTAGATCAAACAGGTAAAGTGCTAGA
AATCGGTGTTGTTTATCCACATACAGCTAAAGCACGCCGACCAGAAGCAAAACAAAAGATTGCTGAGATTTTATCCACTT
ATCAAGTAGAAGTTATTGCGATTGGTAATGGAACGGCATCACGTGAAACAGAGCAATTTATCGTTGAGGTTATTCGTGAA
TCGAATTCTAATGCTTATTATTGTATCGTTAATGAAGCTGGCGCAAGTGTGTATTCTGCAAGTGAAACAGCTCGCGAAGA
GTTCCCAGATTATCAAGTAGAAGAACGGAGCGCGGTTTCTATCGGAAGACGCTTGCAAGATCCATTAGCAGAACTTGTAA
AAATCGATCCTAAGTCAGTGGGAGTGGGACAATACCAACATGATGTAGCCCAAAAACGATTAAATGAAACATTGACTTTT
GTTGTTGAAACTGCTGTTAACCAAGTAGGAGTCAATGTAAATACAGCGTCTGCTTCCCTTTTACAATATGTTGCAGGCTT
AAATAAAACAGTCGCTAATAATATTCGTAAATACCGCGAAGAAAATGGTTCGTTCACATCACGTAAAGCATTGAAAAAAG
TTCCTCGTCTCGGCGCGAAATCATATGAACAAAGTATTGGCTTCTTACGTATCCTAGAAGGCGACAATCCGCTTGATAAA
ACAGCTATTCACCCTGAAAGCTATAAAGCAGCTGAGCAAATCGTGAAAGCAGCCGGTTTTGATTTGAGTGATATTGGTAG
TGAGGACCTTAAAGCAGCGTTACAAGCACTTAGCATTCCAGAAGAAGCAGAAAAACTAGGCATTGGTAAAGAAACAATGC
GTGATATTATTGATAATTTAATAGCTCCAGGGCGTGATCTTCGTGATGAACTTCCGGCACCACTTTTAAAACAAGATGTT
ATTTCGATGGAAGATTTAAAACAAGGAATGGAATTACAAGGAACTGTTCGTAACGTTGTTGACTTTGGCGCTTTTGTTGA
TATTGGCGTAAAACAAGACGGACTTGTGCACATTTCAAAACTGAGTAATTCCTTTGTTAAAAACCCAATGGATGTCGTTT
CAGTAGGAGATGTTGTAACTGTTTGGGTTGATGAAGTAGATACGAAGAAAAACCGAATTGCTTTAACAATGCGTAACCCA
AATGGAAGTGTTAAATAA

Upstream 100 bases:

>100_bases
CGCGAAAAATGCGTTAAGTGAGCCGAATAGATAGCTTTTGTCAGTTGAAACGTAATTATGTTACACTTATGTAGAGAATG
AATATTGGAGGCTATCAAGT

Downstream 100 bases:

>100_bases
TGAAACAAATAGAATTGCAGCGACACATGGAAGAAGTGTCGCTGCAATTTTTCCAAAAAGAATTCCGTCACCGAGCTGTT
TTTAATGCACGCTTACGGAC

Product: transcriptional accessory RNA-binding protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 725; Mature: 725

Protein sequence:

>725_residues
MEQMQDKIIKLVQKSLSYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLID
EQGKLTDELRAAIIQAEKHQALEDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSDADPLKEAANYISEDKEVETAES
ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAILDAYKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKG
KIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYQVEVIAIGNGTASRETEQFIVEVIRE
SNSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFTSRKALKKVPRLGAKSYEQSIGFLRILEGDNPLDK
TAIHPESYKAAEQIVKAAGFDLSDIGSEDLKAALQALSIPEEAEKLGIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDV
ISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRNP
NGSVK

Sequences:

>Translated_725_residues
MEQMQDKIIKLVQKSLSYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLID
EQGKLTDELRAAIIQAEKHQALEDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSDADPLKEAANYISEDKEVETAES
ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAILDAYKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKG
KIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYQVEVIAIGNGTASRETEQFIVEVIRE
SNSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFTSRKALKKVPRLGAKSYEQSIGFLRILEGDNPLDK
TAIHPESYKAAEQIVKAAGFDLSDIGSEDLKAALQALSIPEEAEKLGIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDV
ISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRNP
NGSVK
>Mature_725_residues
MEQMQDKIIKLVQKSLSYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLID
EQGKLTDELRAAIIQAEKHQALEDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSDADPLKEAANYISEDKEVETAES
ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAILDAYKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKG
KIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYQVEVIAIGNGTASRETEQFIVEVIRE
SNSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFTSRKALKKVPRLGAKSYEQSIGFLRILEGDNPLDK
TAIHPESYKAAEQIVKAAGFDLSDIGSEDLKAALQALSIPEEAEKLGIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDV
ISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRNP
NGSVK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=791, Percent_Identity=34.6396965865992, Blast_Score=434, Evalue=1e-121,
Organism=Homo sapiens, GI27597090, Length=592, Percent_Identity=25.3378378378378, Blast_Score=103, Evalue=6e-22,
Organism=Escherichia coli, GI87082262, Length=726, Percent_Identity=45.0413223140496, Blast_Score=586, Evalue=1e-168,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=43.421052631579, Blast_Score=73, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17511129, Length=734, Percent_Identity=30.2452316076294, Blast_Score=275, Evalue=7e-74,
Organism=Caenorhabditis elegans, GI17552892, Length=292, Percent_Identity=28.0821917808219, Blast_Score=79, Evalue=9e-15,
Organism=Drosophila melanogaster, GI62484314, Length=758, Percent_Identity=35.8839050131926, Blast_Score=427, Evalue=1e-119,
Organism=Drosophila melanogaster, GI24640080, Length=584, Percent_Identity=22.2602739726027, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81568; Mature: 81568

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQMQDKIIKLVQKSLSYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEE
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
TFEYVTKLENRKEEIIRLIDEQGKLTDELRAAIIQAEKHQALEDLYRPYKQKKRTKATIA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEKGLEPLADWLMSFPSDADPLKEAANYISEDKEVETAESALLGAHEIIAEQISDEPSFR
HHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
HHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEE
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAILDAYKRFIGPAIEREIRGELTEKGEEQ
EEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHH
AIHIFSENLRKLLLQPPLKGKIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARR
HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCEEECCCCCCEEEEEEECCCCCCCCC
PEAKQKIAEILSTYQVEVIAIGNGTASRETEQFIVEVIRESNSNAYYCIVNEAGASVYSA
CHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHH
SETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFTSRKALKKVPRLGAK
HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHH
SYEQSIGFLRILEGDNPLDKTAIHPESYKAAEQIVKAAGFDLSDIGSEDLKAALQALSIP
HHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCC
EEAEKLGIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVV
HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHCCHHHHHCCCHHHHHHHHHH
DFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRNP
HHHHHEECCCCCCCCEEHHHHHHHHHCCCHHHHHHCCEEEEEHHCCCCCCCEEEEEEECC
NGSVK
CCCCC
>Mature Secondary Structure
MEQMQDKIIKLVQKSLSYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEE
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
TFEYVTKLENRKEEIIRLIDEQGKLTDELRAAIIQAEKHQALEDLYRPYKQKKRTKATIA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEKGLEPLADWLMSFPSDADPLKEAANYISEDKEVETAESALLGAHEIIAEQISDEPSFR
HHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
HHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEE
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAILDAYKRFIGPAIEREIRGELTEKGEEQ
EEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHH
AIHIFSENLRKLLLQPPLKGKIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARR
HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCEEECCCCCCEEEEEEECCCCCCCCC
PEAKQKIAEILSTYQVEVIAIGNGTASRETEQFIVEVIRESNSNAYYCIVNEAGASVYSA
CHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHH
SETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFTSRKALKKVPRLGAK
HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHH
SYEQSIGFLRILEGDNPLDKTAIHPESYKAAEQIVKAAGFDLSDIGSEDLKAALQALSIP
HHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCC
EEAEKLGIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVV
HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHCCHHHHHCCCHHHHHHHHHH
DFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRNP
HHHHHEECCCCCCCCEEHHHHHHHHHCCCHHHHHHCCEEEEEHHCCCCCCCEEEEEEECC
NGSVK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]