Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is map [H]
Identifier: 116690041
GI number: 116690041
Start: 2236744
End: 2237559
Strand: Direct
Name: map [H]
Synonym: Bcen2424_2020
Alternate gene names: 116690041
Gene position: 2236744-2237559 (Clockwise)
Preceding gene: 116690024
Following gene: 116690042
Centisome position: 64.2
GC content: 65.07
Gene sequence:
>816_bases ATGGCTATTACGCTCAAAAACGAACACGATATCGCGGAGATGCGCGTCGCCTGCCGTCTCGCCAGCGAAGTGCTCGACTT CATCACGCCGCACGTCGTCGCGGGCGTCACGACCGCCGAACTCGACCGCCTCTGCCACGAGTTCATGCTCAACGAGCAAG GCACGATCCCCGCGCCGCTGAACTACCAGCCGCCCGGCTATCCGCCGTACCCGAAGGCCACCTGCATTTCGGTCAACGAC GTGATCTGCCACGGCATTCCCGGCGAGAAGGTGATCAAGAACGGCGACGCGCTGAACATCGACATCACCGTGATCAAGAA CGGCTACTTCGGCGACACCAGCCGGATGTTCATCGTCGGCGAGGGTTCGATCCTCGCGAAGCGCCTCGTGCAGACCACCT ACGAATGCATGTGGCTCGGCATCGACCAGGTCAAGCCCGGCGCGCACCTCGGCGACATCGGCTACGCGATCCAGAAGCAC GCGGAGGCGCAGGGCTACAGCGTCGTGCGCGAATACTGCGGCCATGGCATCGGCACGGTGTTCCACGAGGACCCGCAGGT CGTCCACTACGGTCGCCCGGGCACCGGTATCGAACTGAAGGCCGGGATGATCTTCACGATCGAGCCGATGATCAACGCCG GCAAGCGCGACATCCGCACGATGCCCGACCAGTGGACGGTCAAGACGCGCGACCGCAGCCTGTCCGCGCAATGGGAGCAC ACGGTGCTCGTCACCGAAACCGGCTACGAGGTGCTGACCGTGTCGGCCGGCACGCCGGCGCGCCCCGTGTTCGCGCAATC GGCCGCCGCCGTCTGA
Upstream 100 bases:
>100_bases ACAATCCGCGAAAACCCGCATCCGCGCGGCCGGCAGGGGCTGCGAGGCCCGCCATAAGGTGCGATAATCCGTCAATTCAC CGCATTCCAGGCATACCTCG
Downstream 100 bases:
>100_bases GCGCCGTCGCGCCAGCCCGCCCCACCCCGCACCTGAACGGCCGCCCATGAGCGCTCACGCTGCCCCCTCGCCCGAAGCGC TGTCGCGGCGCGCCGAATTC
Product: methionine aminopeptidase
Products: NA
Alternate protein names: MAP; Peptidase M [H]
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MAITLKNEHDIAEMRVACRLASEVLDFITPHVVAGVTTAELDRLCHEFMLNEQGTIPAPLNYQPPGYPPYPKATCISVND VICHGIPGEKVIKNGDALNIDITVIKNGYFGDTSRMFIVGEGSILAKRLVQTTYECMWLGIDQVKPGAHLGDIGYAIQKH AEAQGYSVVREYCGHGIGTVFHEDPQVVHYGRPGTGIELKAGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEH TVLVTETGYEVLTVSAGTPARPVFAQSAAAV
Sequences:
>Translated_271_residues MAITLKNEHDIAEMRVACRLASEVLDFITPHVVAGVTTAELDRLCHEFMLNEQGTIPAPLNYQPPGYPPYPKATCISVND VICHGIPGEKVIKNGDALNIDITVIKNGYFGDTSRMFIVGEGSILAKRLVQTTYECMWLGIDQVKPGAHLGDIGYAIQKH AEAQGYSVVREYCGHGIGTVFHEDPQVVHYGRPGTGIELKAGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEH TVLVTETGYEVLTVSAGTPARPVFAQSAAAV >Mature_270_residues AITLKNEHDIAEMRVACRLASEVLDFITPHVVAGVTTAELDRLCHEFMLNEQGTIPAPLNYQPPGYPPYPKATCISVNDV ICHGIPGEKVIKNGDALNIDITVIKNGYFGDTSRMFIVGEGSILAKRLVQTTYECMWLGIDQVKPGAHLGDIGYAIQKHA EAQGYSVVREYCGHGIGTVFHEDPQVVHYGRPGTGIELKAGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEHT VLVTETGYEVLTVSAGTPARPVFAQSAAAV
Specific function: Removes the amino-terminal methionine from nascent proteins [H]
COG id: COG0024
COG function: function code J; Methionine aminopeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24A family [H]
Homologues:
Organism=Homo sapiens, GI164420681, Length=262, Percent_Identity=49.236641221374, Blast_Score=244, Evalue=7e-65, Organism=Homo sapiens, GI40385867, Length=252, Percent_Identity=38.8888888888889, Blast_Score=186, Evalue=3e-47, Organism=Escherichia coli, GI1786364, Length=255, Percent_Identity=58.4313725490196, Blast_Score=313, Evalue=6e-87, Organism=Escherichia coli, GI1788728, Length=254, Percent_Identity=25.1968503937008, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71996291, Length=252, Percent_Identity=46.8253968253968, Blast_Score=221, Evalue=2e-58, Organism=Saccharomyces cerevisiae, GI6323273, Length=262, Percent_Identity=44.2748091603053, Blast_Score=220, Evalue=2e-58, Organism=Drosophila melanogaster, GI21355531, Length=262, Percent_Identity=45.8015267175573, Blast_Score=219, Evalue=1e-57, Organism=Drosophila melanogaster, GI24583427, Length=249, Percent_Identity=37.7510040160643, Blast_Score=180, Evalue=8e-46,
Paralogues:
None
Copy number: 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR002467 [H]
Pfam domain/function: PF00557 Peptidase_M24 [H]
EC number: =3.4.11.18 [H]
Molecular weight: Translated: 29649; Mature: 29518
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: PS00680 MAP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAITLKNEHDIAEMRVACRLASEVLDFITPHVVAGVTTAELDRLCHEFMLNEQGTIPAPL CEEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC NYQPPGYPPYPKATCISVNDVICHGIPGEKVIKNGDALNIDITVIKNGYFGDTSRMFIVG CCCCCCCCCCCCEEEEEECCEEEECCCCHHHHCCCCEEEEEEEEEECCCCCCCCEEEEEE EGSILAKRLVQTTYECMWLGIDQVKPGAHLGDIGYAIQKHAEAQGYSVVREYCGHGIGTV CCHHHHHHHHHHHHHHEEEEHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEE FHEDPQVVHYGRPGTGIELKAGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEH EECCCCEEEECCCCCCEEEECCEEEEEECCCCCCCHHHHCCCCCEEEEECCCCCCCCCCE TVLVTETGYEVLTVSAGTPARPVFAQSAAAV EEEEEECCCEEEEEECCCCCCCHHHHHCCCC >Mature Secondary Structure AITLKNEHDIAEMRVACRLASEVLDFITPHVVAGVTTAELDRLCHEFMLNEQGTIPAPL EEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC NYQPPGYPPYPKATCISVNDVICHGIPGEKVIKNGDALNIDITVIKNGYFGDTSRMFIVG CCCCCCCCCCCCEEEEEECCEEEECCCCHHHHCCCCEEEEEEEEEECCCCCCCCEEEEEE EGSILAKRLVQTTYECMWLGIDQVKPGAHLGDIGYAIQKHAEAQGYSVVREYCGHGIGTV CCHHHHHHHHHHHHHHEEEEHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEE FHEDPQVVHYGRPGTGIELKAGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEH EECCCCEEEECCCCCCEEEECCEEEEEECCCCCCCHHHHCCCCCEEEEECCCCCCCCCCE TVLVTETGYEVLTVSAGTPARPVFAQSAAAV EEEEEECCCEEEEEECCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]