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The map label for this gene is hfq [H]

Identifier: 116689828

GI number: 116689828

Start: 2008450

End: 2008689

Strand: Reverse

Name: hfq [H]

Synonym: Bcen2424_1807

Alternate gene names: 116689828

Gene position: 2008689-2008450 (Counterclockwise)

Preceding gene: 116689829

Following gene: 116689827

Centisome position: 57.66

GC content: 54.17

Gene sequence:

>240_bases
ATGAGCAACAAAGGGCAATTGTTACAAGACCCGTTTTTGAACGCACTGCGCAAAGAGCACGTTCCCGTTTCGATCTACCT
CGTCAACGGCATCAAGCTTCAAGGGAACATTGAATCGTTCGACCAGTACGTCGTGTTGCTCCGTAATACGGTGACCCAGA
TGGTTTACAAGCACGCCATCTCGACGGTCGTGCCGGCGCGCCCGGTGAATTTCCACCCGGACGCGGAAGCCTCGTCCTAA

Upstream 100 bases:

>100_bases
GCGGGGCAGGCAAAATCAGCTATAGTGTAGCGATTGGCGCCGGATCTCTTTTTCTTCGTCGCCAATCCAGATCAACCTGC
AAAAAAAGATGGAGTACGCC

Downstream 100 bases:

>100_bases
CTTATCGCAGCGGCCGGCATCCGGTCGCCGCGAGCGACCGATGCCAGCCGCCTTATCTTGACACCCGATAATTTGATCAA
CGCAGCGCTCGTCGGCATCG

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEASS

Sequences:

>Translated_79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEASS
>Mature_78_residues
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEASS

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=71, Percent_Identity=81.6901408450704, Blast_Score=127, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8849; Mature: 8718

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDAEASS
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDAEASS
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA