Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689808
Identifier: 116689808
GI number: 116689808
Start: 1983821
End: 1984663
Strand: Reverse
Name: 116689808
Synonym: Bcen2424_1787
Alternate gene names: NA
Gene position: 1984663-1983821 (Counterclockwise)
Preceding gene: 116689809
Following gene: 116689807
Centisome position: 56.97
GC content: 68.21
Gene sequence:
>843_bases ATGCGAGGGATTCGAACGGCATCGACCGGCAGGCTGGCCGGTCTTGCTGCGATGTTCATGATGGGTGTCGGCGTGGCCTT GCCGAGCTTTGCGATGGATTGCGCGAAAGCCGTCCAGCCGATCGAGAAGCGCATTTGCGCGAGCCCCGCGCTGCGCGCGG CCGATGCGCGGTTGAATGCGGCCTATGCGGGCGCGCTGAAGGCCGCGCCGGACGCCGCCATCCGCGACATGCTGGTGCGT AGCCAGCGCCGCTGGCTCGATGCGCGCAACAAGCGCCTCGATACCGATTACGAAGGCCATCGGCTGGCCGTCGACGAAGT GCGCAAGGCCTTCGATCGGCGTGCCGCCGTGCTGGCCGACCGATCGGGCGAAGGGCTGATCGCGCGAGCTCTGGCTGAAC GGCAGTGGCTCGCGAAATACAGCGGCGGCCCGCTGGCCGGCTTCGATGCAAACTGCGATTTCATCCCCGACGATGCGAGT GGCGCGCATGTTTCCTATGCGTGTTTCGGCGCGATTCACGTGCAGCATCATGCGCGGGTGTGCAGCCAGAGCGAGGACTG GGCGACCGGCGCGGTCTACCAGTATCGTCTGGTGAGCGCGGCCGATGGCGGGAAGGTGCATCCGGTGGCGTTCTGCGAAG CGCAAGGCGCGCATGCATGCGACAGCGGCAGCGCGCAGGCGGGATGGGTGGGTGCCGCGACGCCCGGCGGCGAGAGCCGT ACACCCGCGCCGGTGACGGGCCTGCCGCAGCTCGATGCCGAATTGTGGCCGCTCGGCGATGGCGGCGATGCGGCGTGGTT CGATCGGTGTCTGACGGCGCCGGTGTTTCCGGATGTGCACTGA
Upstream 100 bases:
>100_bases CGCTTTTGGCGAACGCCGGGGCGGTTCCGGCGCACGGCGATAGGTGCGATACCGCGTCGATGCGGGGCGGCCGAGAAAAA CAAACCGACTGAGAGAAAGC
Downstream 100 bases:
>100_bases CGCGCGGCGTTGGGGGTTCGAGCAAGGCCCGCGATGACTGGCGTTTTGTTTTACCGGCCGCGGAATCGAGCGTCGCCAAT GTCGGGCAATCGTTTGTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MRGIRTASTGRLAGLAAMFMMGVGVALPSFAMDCAKAVQPIEKRICASPALRAADARLNAAYAGALKAAPDAAIRDMLVR SQRRWLDARNKRLDTDYEGHRLAVDEVRKAFDRRAAVLADRSGEGLIARALAERQWLAKYSGGPLAGFDANCDFIPDDAS GAHVSYACFGAIHVQHHARVCSQSEDWATGAVYQYRLVSAADGGKVHPVAFCEAQGAHACDSGSAQAGWVGAATPGGESR TPAPVTGLPQLDAELWPLGDGGDAAWFDRCLTAPVFPDVH
Sequences:
>Translated_280_residues MRGIRTASTGRLAGLAAMFMMGVGVALPSFAMDCAKAVQPIEKRICASPALRAADARLNAAYAGALKAAPDAAIRDMLVR SQRRWLDARNKRLDTDYEGHRLAVDEVRKAFDRRAAVLADRSGEGLIARALAERQWLAKYSGGPLAGFDANCDFIPDDAS GAHVSYACFGAIHVQHHARVCSQSEDWATGAVYQYRLVSAADGGKVHPVAFCEAQGAHACDSGSAQAGWVGAATPGGESR TPAPVTGLPQLDAELWPLGDGGDAAWFDRCLTAPVFPDVH >Mature_280_residues MRGIRTASTGRLAGLAAMFMMGVGVALPSFAMDCAKAVQPIEKRICASPALRAADARLNAAYAGALKAAPDAAIRDMLVR SQRRWLDARNKRLDTDYEGHRLAVDEVRKAFDRRAAVLADRSGEGLIARALAERQWLAKYSGGPLAGFDANCDFIPDDAS GAHVSYACFGAIHVQHHARVCSQSEDWATGAVYQYRLVSAADGGKVHPVAFCEAQGAHACDSGSAQAGWVGAATPGGESR TPAPVTGLPQLDAELWPLGDGGDAAWFDRCLTAPVFPDVH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29618; Mature: 29618
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGIRTASTGRLAGLAAMFMMGVGVALPSFAMDCAKAVQPIEKRICASPALRAADARLNA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH AYAGALKAAPDAAIRDMLVRSQRRWLDARNKRLDTDYEGHRLAVDEVRKAFDRRAAVLAD HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCC RSGEGLIARALAERQWLAKYSGGPLAGFDANCDFIPDDASGAHVSYACFGAIHVQHHARV CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHH CSQSEDWATGAVYQYRLVSAADGGKVHPVAFCEAQGAHACDSGSAQAGWVGAATPGGESR HCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCC TPAPVTGLPQLDAELWPLGDGGDAAWFDRCLTAPVFPDVH CCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRGIRTASTGRLAGLAAMFMMGVGVALPSFAMDCAKAVQPIEKRICASPALRAADARLNA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH AYAGALKAAPDAAIRDMLVRSQRRWLDARNKRLDTDYEGHRLAVDEVRKAFDRRAAVLAD HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCC RSGEGLIARALAERQWLAKYSGGPLAGFDANCDFIPDDASGAHVSYACFGAIHVQHHARV CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHH CSQSEDWATGAVYQYRLVSAADGGKVHPVAFCEAQGAHACDSGSAQAGWVGAATPGGESR HCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCC TPAPVTGLPQLDAELWPLGDGGDAAWFDRCLTAPVFPDVH CCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA