Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is yhjG [H]
Identifier: 116689793
GI number: 116689793
Start: 1968958
End: 1971255
Strand: Reverse
Name: yhjG [H]
Synonym: Bcen2424_1772
Alternate gene names: 116689793
Gene position: 1971255-1968958 (Counterclockwise)
Preceding gene: 116689796
Following gene: 116689791
Centisome position: 56.58
GC content: 67.58
Gene sequence:
>2298_bases ATGACGCTAACCCGAGCCATCGGCAAATCGGCTGCATGGATCGTCGGTATCGTCGCGGTGCTCATCGCGGCGGCCGGCAT CTTTATCTTCACGTTCGACTGGAACCGCGCGAAACCGTGGGTCAACGAACAGGTGAGTACCGCGCTCGGCCGCCCGTTCG CGATCAACGGCGATCTCAAGGTCGGCTGGCGTCGTCCCGATGGCGAGACCGGCTGGCGTGCATGGGTGCCCTGGCCGAGC TTCTCCGCCACGCAACTCGAGATCGGCAATCCCGACTGGGCGCAGGCGCCCAAGTTCGTCACGCTCGATGCCGCGCACTT CGATCTCGCGCTCCTGCCGCTGCTGGCGCATGAAATCGTCATCCCGTCGATCGACGTCGTGAATCCTGCCGTCGATCTCG AACGGCGCGCGGACGGCAGCAATACGTGGACCTTCCAGTTCAAGCAATCGTCGCAGCCTTCGCGGTGGAAGGTGCGGCTC GACAGCTTCGGTTTCGCGAAGGGCACCGTCACGTATCGCGATGCGATCACGAAGGCCGACCTGACCGTCGCGATCGATAC GCTCGGGCAGCCGATTCCGCTCGGCGACGTGCTGAAGGAGCAGGAGCAGACCTCGCGTGCGGCGTCGGCGCAGCGCGTCG GCAAGCATGGCGCCGCGCAACTGGGCGCGAAGGCCGATGCGCAAGCCGCGTCGGGCGAGTCGGGGGCGAGTGCGGTCGCG GCCTCGGGTGCGTCGGCTGCGAGCGGCGTTGCTTCGGCTGCGTCAGGTTCGTCCGGTTCATCCGCTTCGTCCGCGCCTTC CGCGTCGGCGGCCGCTGCCGCGTCCGGCGCGAGCGGCGCCGCGGCGCCCGCGAAGCCGTCCGGCCCCACCTACGCGTTCG GGCTGAAGGTCGACGGCCGCTACAAGAACGTGCCGATCAGCGGCACCGGCAAGGTCGGCGGCGTGCTCGCGATCCAGGAT ACGTCGCAGCCGTTCCCGCTGCAGGCCGACGTGAAGGCGGGCGATACGCGGCTCGCGATTGTCGGCACGCTGACCGATCC GAGGCATCTCGCGGCGCTCGACCTGCGGCTGTGGCTGCAGGGCACGTCGATGTCGCACCTTTACCAGCTCACCGGCATCA CGCTGCCCGATACGCCGCCTTACGCGACCGAAGGGCGCTTGATCGGCAACTTCAAGCCGAATGCGAGCACCTTCCGCTAC GAGAACTTCAACGGTCGCGTCGGCGGCAGCGATCTCGGCGGCACGCTCACCTGGGCGCAGCGCGAGCCGCGGCCGAAGCT GTCGGGCGAACTCGTGTCGAACCTGCTGCAGTTCTCCGATCTCGCGCCGGTGATCGGCGCCGACTCGGCCGCGAGCAAGA AGAAGCGCGGCGACACGACGCGCCAGCCGCCCGACCGCGTGCTGCCGGTCGCGGCGTTCCGCACCGAACGGTGGAGCGCG ATCGATGCAGACGTGAAGTTCACCGGCCGCAAGCTGATCAAGAGCGCGGACCTGCCGATCACCAACCTGTACACGCACAT TCTGATGCAGGACGGCGTGCTGACGCTGGAGCCGCTGCAGTTCGGCGTCGCGGGCGGCACGCTCGCGACGAATGCGCATC TCGACGGCAGCCGCACGCCGCTCAAGGGCCGCTTCACGCTGGCCGCGCGGCATCTGAAGCTCAAGCAGCTGTTCCCGACG CAGAAGGTGATGCAGTCGGCGTTCGGCGAAATCAACGGCGACGCGTCGCTGTCGGCAACGGGCAATTCGCCGGCCGCGCT CGCGGCGACGTCGACCGGCGAAGTGAAGGCGCTCATCACCAACGGTCGCATCAGCCGCCTGCTGATGGAGGCCGCGGGGT TGAACGTCGCGAACGTCGTCTACGAGAAACTGTTCGGCAACCGCGACGTCAACATCAATTGCGCGGCGATCGATTTCGTC GCGACCGACGGCATGCTCGACCCGAAGGTCTTCGCGCTCGATACCGACGACGCGCTCATCAACGTCGACGGCCCGATCAA CCTGCGCGACGAATCGCTCGACCTGAAGATCCATCCGCACACGAAGGGCTTCCGGATCTTCTCGCTGCGCTCGCCGTTGT ATGCGAAGGGCACGTTCAAGAACCCGAAGGTCGGCGTCGATGCGGGCGCGCTCGCGCTGCGCGCCGGCGCGATGGTCGGG CTCGGGCTGATCAACCCGTTCGCGGCGCTGATCCCGCTGATCGCGCCGAGCAACAACCGCGACGTGCCGTGCTCGGAACT GTTCGGGCAGATGAAGGCGCAGGCGGCGCAGAAAGCGGCCAAGAAGGCCGGCAAGTGA
Upstream 100 bases:
>100_bases CCATAATACCGATTGAAAAGCCGCAGTTGTCGTGCGCCGTTCGTCCACGCAAGCGGCCCGGCATGGCGCGGCAACGCTTC AGAACAACAACGGAACCGCC
Downstream 100 bases:
>100_bases TGCGCGCAGCCGTCGGAGCGGCTTGTGCCGCGGTGCGGCGGCTCGGCATCGTTGCCGCGACCGGCTGAGCGCTGGCCGTG CGGCGCCGCCGAGGTGCTCA
Product: AsmA family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 765; Mature: 764
Protein sequence:
>765_residues MTLTRAIGKSAAWIVGIVAVLIAAAGIFIFTFDWNRAKPWVNEQVSTALGRPFAINGDLKVGWRRPDGETGWRAWVPWPS FSATQLEIGNPDWAQAPKFVTLDAAHFDLALLPLLAHEIVIPSIDVVNPAVDLERRADGSNTWTFQFKQSSQPSRWKVRL DSFGFAKGTVTYRDAITKADLTVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLGAKADAQAASGESGASAVA ASGASAASGVASAASGSSGSSASSAPSASAAAAASGASGAAAPAKPSGPTYAFGLKVDGRYKNVPISGTGKVGGVLAIQD TSQPFPLQADVKAGDTRLAIVGTLTDPRHLAALDLRLWLQGTSMSHLYQLTGITLPDTPPYATEGRLIGNFKPNASTFRY ENFNGRVGGSDLGGTLTWAQREPRPKLSGELVSNLLQFSDLAPVIGADSAASKKKRGDTTRQPPDRVLPVAAFRTERWSA IDADVKFTGRKLIKSADLPITNLYTHILMQDGVLTLEPLQFGVAGGTLATNAHLDGSRTPLKGRFTLAARHLKLKQLFPT QKVMQSAFGEINGDASLSATGNSPAALAATSTGEVKALITNGRISRLLMEAAGLNVANVVYEKLFGNRDVNINCAAIDFV ATDGMLDPKVFALDTDDALINVDGPINLRDESLDLKIHPHTKGFRIFSLRSPLYAKGTFKNPKVGVDAGALALRAGAMVG LGLINPFAALIPLIAPSNNRDVPCSELFGQMKAQAAQKAAKKAGK
Sequences:
>Translated_765_residues MTLTRAIGKSAAWIVGIVAVLIAAAGIFIFTFDWNRAKPWVNEQVSTALGRPFAINGDLKVGWRRPDGETGWRAWVPWPS FSATQLEIGNPDWAQAPKFVTLDAAHFDLALLPLLAHEIVIPSIDVVNPAVDLERRADGSNTWTFQFKQSSQPSRWKVRL DSFGFAKGTVTYRDAITKADLTVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLGAKADAQAASGESGASAVA ASGASAASGVASAASGSSGSSASSAPSASAAAAASGASGAAAPAKPSGPTYAFGLKVDGRYKNVPISGTGKVGGVLAIQD TSQPFPLQADVKAGDTRLAIVGTLTDPRHLAALDLRLWLQGTSMSHLYQLTGITLPDTPPYATEGRLIGNFKPNASTFRY ENFNGRVGGSDLGGTLTWAQREPRPKLSGELVSNLLQFSDLAPVIGADSAASKKKRGDTTRQPPDRVLPVAAFRTERWSA IDADVKFTGRKLIKSADLPITNLYTHILMQDGVLTLEPLQFGVAGGTLATNAHLDGSRTPLKGRFTLAARHLKLKQLFPT QKVMQSAFGEINGDASLSATGNSPAALAATSTGEVKALITNGRISRLLMEAAGLNVANVVYEKLFGNRDVNINCAAIDFV ATDGMLDPKVFALDTDDALINVDGPINLRDESLDLKIHPHTKGFRIFSLRSPLYAKGTFKNPKVGVDAGALALRAGAMVG LGLINPFAALIPLIAPSNNRDVPCSELFGQMKAQAAQKAAKKAGK >Mature_764_residues TLTRAIGKSAAWIVGIVAVLIAAAGIFIFTFDWNRAKPWVNEQVSTALGRPFAINGDLKVGWRRPDGETGWRAWVPWPSF SATQLEIGNPDWAQAPKFVTLDAAHFDLALLPLLAHEIVIPSIDVVNPAVDLERRADGSNTWTFQFKQSSQPSRWKVRLD SFGFAKGTVTYRDAITKADLTVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLGAKADAQAASGESGASAVAA SGASAASGVASAASGSSGSSASSAPSASAAAAASGASGAAAPAKPSGPTYAFGLKVDGRYKNVPISGTGKVGGVLAIQDT SQPFPLQADVKAGDTRLAIVGTLTDPRHLAALDLRLWLQGTSMSHLYQLTGITLPDTPPYATEGRLIGNFKPNASTFRYE NFNGRVGGSDLGGTLTWAQREPRPKLSGELVSNLLQFSDLAPVIGADSAASKKKRGDTTRQPPDRVLPVAAFRTERWSAI DADVKFTGRKLIKSADLPITNLYTHILMQDGVLTLEPLQFGVAGGTLATNAHLDGSRTPLKGRFTLAARHLKLKQLFPTQ KVMQSAFGEINGDASLSATGNSPAALAATSTGEVKALITNGRISRLLMEAAGLNVANVVYEKLFGNRDVNINCAAIDFVA TDGMLDPKVFALDTDDALINVDGPINLRDESLDLKIHPHTKGFRIFSLRSPLYAKGTFKNPKVGVDAGALALRAGAMVGL GLINPFAALIPLIAPSNNRDVPCSELFGQMKAQAAQKAAKKAGK
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=490, Percent_Identity=45.7142857142857, Blast_Score=444, Evalue=1e-126,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 80434; Mature: 80303
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTRAIGKSAAWIVGIVAVLIAAAGIFIFTFDWNRAKPWVNEQVSTALGRPFAINGDLK CCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHCCCCEEECCCEE VGWRRPDGETGWRAWVPWPSFSATQLEIGNPDWAQAPKFVTLDAAHFDLALLPLLAHEIV EEEECCCCCCCCEEEECCCCCCCEEEECCCCCHHCCCCEEEEECCHHHHHHHHHHHHHHH IPSIDVVNPAVDLERRADGSNTWTFQFKQSSQPSRWKVRLDSFGFAKGTVTYRDAITKAD CCCCHHCCCCHHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEEHHHHHCCCC LTVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLGAKADAQAASGESGASAVA EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHH ASGASAASGVASAASGSSGSSASSAPSASAAAAASGASGAAAPAKPSGPTYAFGLKVDGR CCCCCHHHCHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCE YKNVPISGTGKVGGVLAIQDTSQPFPLQADVKAGDTRLAIVGTLTDPRHLAALDLRLWLQ EECCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCEEEEEEEECCCCCCEEEEEEEEEEE GTSMSHLYQLTGITLPDTPPYATEGRLIGNFKPNASTFRYENFNGRVGGSDLGGTLTWAQ CCCHHHEEEECCEECCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCEEEECC REPRPKLSGELVSNLLQFSDLAPVIGADSAASKKKRGDTTRQPPDRVLPVAAFRTERWSA CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHEEEEHHHCCCCCCE IDADVKFTGRKLIKSADLPITNLYTHILMQDGVLTLEPLQFGVAGGTLATNAHLDGSRTP ECCCEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEECCCEEECCCCEEEECCCCCCCCCC LKGRFTLAARHLKLKQLFPTQKVMQSAFGEINGDASLSATGNSPAALAATSTGEVKALIT CCCEEEEHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCEEEEEE NGRISRLLMEAAGLNVANVVYEKLFGNRDVNINCAAIDFVATDGMLDPKVFALDTDDALI CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCEEE NVDGPINLRDESLDLKIHPHTKGFRIFSLRSPLYAKGTFKNPKVGVDAGALALRAGAMVG ECCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHH LGLINPFAALIPLIAPSNNRDVPCSELFGQMKAQAAQKAAKKAGK HHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TLTRAIGKSAAWIVGIVAVLIAAAGIFIFTFDWNRAKPWVNEQVSTALGRPFAINGDLK CCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHCCCCEEECCCEE VGWRRPDGETGWRAWVPWPSFSATQLEIGNPDWAQAPKFVTLDAAHFDLALLPLLAHEIV EEEECCCCCCCCEEEECCCCCCCEEEECCCCCHHCCCCEEEEECCHHHHHHHHHHHHHHH IPSIDVVNPAVDLERRADGSNTWTFQFKQSSQPSRWKVRLDSFGFAKGTVTYRDAITKAD CCCCHHCCCCHHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEEHHHHHCCCC LTVAIDTLGQPIPLGDVLKEQEQTSRAASAQRVGKHGAAQLGAKADAQAASGESGASAVA EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHH ASGASAASGVASAASGSSGSSASSAPSASAAAAASGASGAAAPAKPSGPTYAFGLKVDGR CCCCCHHHCHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCE YKNVPISGTGKVGGVLAIQDTSQPFPLQADVKAGDTRLAIVGTLTDPRHLAALDLRLWLQ EECCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCEEEEEEEECCCCCCEEEEEEEEEEE GTSMSHLYQLTGITLPDTPPYATEGRLIGNFKPNASTFRYENFNGRVGGSDLGGTLTWAQ CCCHHHEEEECCEECCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCEEEECC REPRPKLSGELVSNLLQFSDLAPVIGADSAASKKKRGDTTRQPPDRVLPVAAFRTERWSA CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHEEEEHHHCCCCCCE IDADVKFTGRKLIKSADLPITNLYTHILMQDGVLTLEPLQFGVAGGTLATNAHLDGSRTP ECCCEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEECCCEEECCCCEEEECCCCCCCCCC LKGRFTLAARHLKLKQLFPTQKVMQSAFGEINGDASLSATGNSPAALAATSTGEVKALIT CCCEEEEHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCEEEEEE NGRISRLLMEAAGLNVANVVYEKLFGNRDVNINCAAIDFVATDGMLDPKVFALDTDDALI CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCEEE NVDGPINLRDESLDLKIHPHTKGFRIFSLRSPLYAKGTFKNPKVGVDAGALALRAGAMVG ECCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHH LGLINPFAALIPLIAPSNNRDVPCSELFGQMKAQAAQKAAKKAGK HHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]