Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689790
Identifier: 116689790
GI number: 116689790
Start: 1965661
End: 1966410
Strand: Reverse
Name: 116689790
Synonym: Bcen2424_1769
Alternate gene names: NA
Gene position: 1966410-1965661 (Counterclockwise)
Preceding gene: 116689791
Following gene: 116689789
Centisome position: 56.44
GC content: 64.27
Gene sequence:
>750_bases ATGCAGGATCATCCTCTCCCGCTCGACCTGTCCGGCCTTGCGCCCAGCCTGTACGCGCAGGGCACCGAGGAGGGCATCCT GTCGCGCCTGATGGAGCGGATCGCGCCGACCAACCGCTTCTGCGTCGATATCGGCGCGAGCGACGGCCTGCGCAACAGCA ATACCGCGCGGCTGCTACGCGAACAGGATTGGGCCGGCGTACTGGTGGAAGGCAGCGCATACCGGTTCGGCAAGCTCGCC GCGCACTACGCGGGCGTGGAACGTGTCCGCCTGCACCACGATCGCGTCCAGCCCGACACGGTCGACCCACTGCTCGTCGA CGCGAACGTACCGACCGACTTCGACCTGCTGTCGATCGACATCGACGGTAACGATTACTGGGTATGGCGCGGCCTGCAGG CGTTCCAGCCGCGCATCGTCGTGATCGAATACAACCCGTACTACACGCCGCCCGAGCGCTGGGTCATGTGCTTCAATCCG GACCACGAATGGGACGGCTCGACTTATTACGGCGCGAGCCTCGAATCGCTCGTGCATCTCGGCAGGCAGAAGGGCTATGA GCTCGTTTGCTGCGACGACATGGGCAACAACGCGTTCTTCGTGCGACGCGACCTGTACCCGCTGCTCGGCATCGCGAACA ACGATCCGTCGGTGTTGTTCCGACCGGCGATGTACAAGCTGCGCTACGTCGGACACAACACGTTCCTGACCGGTCATCCG TATCGGCACGGGCCGGCCGAGCACATCTGA
Upstream 100 bases:
>100_bases CGATGCTGGACATCCCAGTTTCCCCTGCTCAATCGACTTCAGGTAAATTACCCACCGAACACCGCCCATCATTCCCCATT TCGCCCCGGAGCCGCCTTCG
Downstream 100 bases:
>100_bases ATGGATTCGCTCGCCGTCACTTTCGACGAGATTCGCGATGCCTATGGGCTCGCTCGTAGCGGGCCACCGACGCAGGTCAG CGAACGCGTGTGGCGTCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MQDHPLPLDLSGLAPSLYAQGTEEGILSRLMERIAPTNRFCVDIGASDGLRNSNTARLLREQDWAGVLVEGSAYRFGKLA AHYAGVERVRLHHDRVQPDTVDPLLVDANVPTDFDLLSIDIDGNDYWVWRGLQAFQPRIVVIEYNPYYTPPERWVMCFNP DHEWDGSTYYGASLESLVHLGRQKGYELVCCDDMGNNAFFVRRDLYPLLGIANNDPSVLFRPAMYKLRYVGHNTFLTGHP YRHGPAEHI
Sequences:
>Translated_249_residues MQDHPLPLDLSGLAPSLYAQGTEEGILSRLMERIAPTNRFCVDIGASDGLRNSNTARLLREQDWAGVLVEGSAYRFGKLA AHYAGVERVRLHHDRVQPDTVDPLLVDANVPTDFDLLSIDIDGNDYWVWRGLQAFQPRIVVIEYNPYYTPPERWVMCFNP DHEWDGSTYYGASLESLVHLGRQKGYELVCCDDMGNNAFFVRRDLYPLLGIANNDPSVLFRPAMYKLRYVGHNTFLTGHP YRHGPAEHI >Mature_249_residues MQDHPLPLDLSGLAPSLYAQGTEEGILSRLMERIAPTNRFCVDIGASDGLRNSNTARLLREQDWAGVLVEGSAYRFGKLA AHYAGVERVRLHHDRVQPDTVDPLLVDANVPTDFDLLSIDIDGNDYWVWRGLQAFQPRIVVIEYNPYYTPPERWVMCFNP DHEWDGSTYYGASLESLVHLGRQKGYELVCCDDMGNNAFFVRRDLYPLLGIANNDPSVLFRPAMYKLRYVGHNTFLTGHP YRHGPAEHI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28307; Mature: 28307
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDHPLPLDLSGLAPSLYAQGTEEGILSRLMERIAPTNRFCVDIGASDGLRNSNTARLLR CCCCCCCEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHC EQDWAGVLVEGSAYRFGKLAAHYAGVERVRLHHDRVQPDTVDPLLVDANVPTDFDLLSID CCCCCEEEEECCCCCHHHHHHHHHCHHHEEEHHCCCCCCCCCCEEEECCCCCCCEEEEEE IDGNDYWVWRGLQAFQPRIVVIEYNPYYTPPERWVMCFNPDHEWDGSTYYGASLESLVHL ECCCCEEEEECHHHCCCEEEEEEECCCCCCHHHEEEEECCCCCCCCCEEECCCHHHHHHH GRQKGYELVCCDDMGNNAFFVRRDLYPLLGIANNDPSVLFRPAMYKLRYVGHNTFLTGHP HHHCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCEEECCCEEEEEEECCCEEEECCC YRHGPAEHI CCCCCCCCC >Mature Secondary Structure MQDHPLPLDLSGLAPSLYAQGTEEGILSRLMERIAPTNRFCVDIGASDGLRNSNTARLLR CCCCCCCEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHC EQDWAGVLVEGSAYRFGKLAAHYAGVERVRLHHDRVQPDTVDPLLVDANVPTDFDLLSID CCCCCEEEEECCCCCHHHHHHHHHCHHHEEEHHCCCCCCCCCCEEEECCCCCCCEEEEEE IDGNDYWVWRGLQAFQPRIVVIEYNPYYTPPERWVMCFNPDHEWDGSTYYGASLESLVHL ECCCCEEEEECHHHCCCEEEEEEECCCCCCHHHEEEEECCCCCCCCCEEECCCHHHHHHH GRQKGYELVCCDDMGNNAFFVRRDLYPLLGIANNDPSVLFRPAMYKLRYVGHNTFLTGHP HHHCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCEEECCCEEEEEEECCCEEEECCC YRHGPAEHI CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA