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The map label for this gene is exbD1 [H]

Identifier: 116689737

GI number: 116689737

Start: 1909999

End: 1910421

Strand: Reverse

Name: exbD1 [H]

Synonym: Bcen2424_1715

Alternate gene names: 116689737

Gene position: 1910421-1909999 (Counterclockwise)

Preceding gene: 116689738

Following gene: 116689736

Centisome position: 54.84

GC content: 62.17

Gene sequence:

>423_bases
ATGGGCATGAACGTCGGGCAGGACGAAAGCGACGAGGTGATCGCGAACATCAACACGACGCCGCTCGTCGACGTGATGCT
GGTGTTGCTGATCATCTTCCTTATCACGATTCCGGTCGTCACGCACACGATCCAGCTGCAGTTGCCGAAGGAGGTCGTGC
AGCCGCTGCAGACCACGCCGAAGAGCGTCGAGATCGCGGTGAACCGCGACGGCGATTTCTTCTGGGGCGAGCAATTGGTG
GATGCGTCGACGTTGCTTGCGAAGCTGAAGGGCGTGTCGCAGCAGCAGCCGCAACCGAGCGTGCACGTGCGGGGCGACCA
GAACACGCGCTACGAGTTCATCGGCCGGGTCATCACGATGTGCGAGCGCGCGGGTATCGCGAAGGTGTCGTTCATTACGG
AACCACCGGCGCGGGGTGGTTAG

Upstream 100 bases:

>100_bases
CCCAGCTGCATACCGTGCTGCTGGCCGGCAGCAAGCGTCCCGCTCGCGTGCCGTCGCCCGCCGCGTCGCTCGTGAACTGA
CCGGCTGACGGAGGCGCGCG

Downstream 100 bases:

>100_bases
CGTTGGATGGGGAACGGCGTACGCGCCGATTCGGATCGACCGCGAAGCATGGGACCAGAACAACCGCTAAAGCGCCAACT
CTGGTCGACCGCGAAGCATG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MGMNVGQDESDEVIANINTTPLVDVMLVLLIIFLITIPVVTHTIQLQLPKEVVQPLQTTPKSVEIAVNRDGDFFWGEQLV
DASTLLAKLKGVSQQQPQPSVHVRGDQNTRYEFIGRVITMCERAGIAKVSFITEPPARGG

Sequences:

>Translated_140_residues
MGMNVGQDESDEVIANINTTPLVDVMLVLLIIFLITIPVVTHTIQLQLPKEVVQPLQTTPKSVEIAVNRDGDFFWGEQLV
DASTLLAKLKGVSQQQPQPSVHVRGDQNTRYEFIGRVITMCERAGIAKVSFITEPPARGG
>Mature_139_residues
GMNVGQDESDEVIANINTTPLVDVMLVLLIIFLITIPVVTHTIQLQLPKEVVQPLQTTPKSVEIAVNRDGDFFWGEQLVD
ASTLLAKLKGVSQQQPQPSVHVRGDQNTRYEFIGRVITMCERAGIAKVSFITEPPARGG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=139, Percent_Identity=30.2158273381295, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15380; Mature: 15249

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMNVGQDESDEVIANINTTPLVDVMLVLLIIFLITIPVVTHTIQLQLPKEVVQPLQTTP
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHCCC
KSVEIAVNRDGDFFWGEQLVDASTLLAKLKGVSQQQPQPSVHVRGDQNTRYEFIGRVITM
CEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
CERAGIAKVSFITEPPARGG
HHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
GMNVGQDESDEVIANINTTPLVDVMLVLLIIFLITIPVVTHTIQLQLPKEVVQPLQTTP
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHCCC
KSVEIAVNRDGDFFWGEQLVDASTLLAKLKGVSQQQPQPSVHVRGDQNTRYEFIGRVITM
CEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
CERAGIAKVSFITEPPARGG
HHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]