Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is yyaJ [H]
Identifier: 116689718
GI number: 116689718
Start: 1884072
End: 1885535
Strand: Reverse
Name: yyaJ [H]
Synonym: Bcen2424_1696
Alternate gene names: 116689718
Gene position: 1885535-1884072 (Counterclockwise)
Preceding gene: 116689721
Following gene: 116689712
Centisome position: 54.12
GC content: 66.8
Gene sequence:
>1464_bases ATGAACAGCCAATCCCTCGACCTAGGCGGCCATGCCGGCGGCCCTGAATCCGCCCGGCCGCCGGCCGCTTCAGCAGGCGC CGGCGCCGATGCGGCAGCCCTTCCCGGCCGCCGCGTCACGCTCGGCGATTTCATGGACGATCTGCCGGTCGGCGCATTGC ATCGATTCGTCGTCTGGGTAATCGGCGTCGGGCTGTTCTTCGACATGTACGAGATTTTTCTCGTCAGTACGATCGGCTCC GCGTTGCAGCACGAATACGGGCTGAGCCGGCAAAGCGCCGATTTCAAGCTATTGCTGGCGTCGGCGTTCATCGGCATGTT CGTCGGCGCGATGTGCCTTGGCAGCCTGGCCGACCGCATCGGCCGGCGCAAGGCGTTCCTGCTCACGCTCGGGTGGTACA GCGCGTTCTCGCTGGTCGGTGCGTTTTCCGTGAACGCCGACATGCTCGTGGCATGCCGGTTCCTGACGGGCATCGGCGTC GGCGCGATCTATCCGGTCGCCGACAGCTTCCTGTCCGAAATCCTGCCGAAGGACAAGCGCGGGCGGCTCGCCGCGTGGGC CTACACGACTTCGTATGTCGCGGTGCCGCTCGTCGGCTTTCTCGCGCTGTGGCTGAATCCGTTGCAGGTGGCGGGCGTCG CCGGCTGGCGCATCATCCTCGCGATCGGCAGCCTCGGCGCCGTGTACGTGCTGCTCGTCCAGCACCGGCTGCCGGAAAGC CCGCGCTGGCTGCTCGCGCAAGGCCGCACGGCCGATGCGCACGCGGCGCTGCGGCGTTTCGCGGAAAGCGCCGGCGTGCG TGTGCCCGAACACTTCGCGGAACCGGTCGAGCCGCAGCGGCCGCTCGGGCTCGGCGAGCGCATCGCGCTGCTACGCCGCC AACCGTATGGCGCCCGCTATGTGATGCTGGCGATCTTTCACCTGTTGCAGGGCTTCGGCTACTACGGGTTCGGCACGCTG GCCGGCACGGTCGTGAAAAGCCGCGGCTTCGACGTGACGGACAGCACGCTGTTCATCGCGCTGTCGTTCATCGGCTATCC GATCGGCTCGCTGCTGTCGATTCCGCTGCTCAACTGGATCGAGCGCCGCACGCTCGTGATCGTGTCGATCCTGTCGATCG CGGTGTTCGGGCTGTGCTTCGCGTATTCGGGCAATACGATGCTGATCGTCGGCTTCGGGTTCCTGACGACCTGTGCGTCG AACGTGTTCAGCAACGCGTATCACGTGTATCAGGCCGAGATTTTCCCGGCGCGCGTGCGCTCGACGGCGATCGGCAGTAC CTATGCGCTGTCGCGGATCGTGAGCGGCGCGCTGCCGTTCGTGTTGCTGCCGGTGCTCGGCCACTACGGCGCGGGCGCGA TGTTCGGCGTGATCTCGGTCGCACTCGGCATCGTCGCCGTCACGCTGCGCGTGCTCGGGCCGCTGACCACGCGGCGCAGC CAGGACGAGATCAATCCGGTTTGA
Upstream 100 bases:
>100_bases GCGCCCGGCGATGCCTGCCGTCGCGTCGCGTGGCCGGCGCGTTACACCGGTCGCGAACGCCAGGCCCAGCGCCACGGCAT ATCGATAATCAGGAGACACG
Downstream 100 bases:
>100_bases CGCGGCGATCGGCACGGGGCGCACGGAACCGCACCCCGTGCGTCGCGTTCCATCGCATTCACCGCGCCGACATGAAATCG AACAGCTTCGCGATGTCGGT
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 487; Mature: 487
Protein sequence:
>487_residues MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWVIGVGLFFDMYEIFLVSTIGS ALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRIGRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGV GAIYPVADSFLSEILPKDKRGRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPES PRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARYVMLAIFHLLQGFGYYGFGTL AGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWIERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCAS NVFSNAYHVYQAEIFPARVRSTAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRS QDEINPV
Sequences:
>Translated_487_residues MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWVIGVGLFFDMYEIFLVSTIGS ALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRIGRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGV GAIYPVADSFLSEILPKDKRGRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPES PRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARYVMLAIFHLLQGFGYYGFGTL AGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWIERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCAS NVFSNAYHVYQAEIFPARVRSTAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRS QDEINPV >Mature_487_residues MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWVIGVGLFFDMYEIFLVSTIGS ALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRIGRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGV GAIYPVADSFLSEILPKDKRGRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPES PRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARYVMLAIFHLLQGFGYYGFGTL AGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWIERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCAS NVFSNAYHVYQAEIFPARVRSTAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRS QDEINPV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI213021148, Length=488, Percent_Identity=24.5901639344262, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI4507005, Length=412, Percent_Identity=25.2427184466019, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI7662270, Length=314, Percent_Identity=23.8853503184713, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI24497490, Length=408, Percent_Identity=24.7549019607843, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI262399383, Length=256, Percent_Identity=23.4375, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI166064021, Length=401, Percent_Identity=25.9351620947631, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI216548223, Length=180, Percent_Identity=28.3333333333333, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI73695465, Length=266, Percent_Identity=23.6842105263158, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI166197673, Length=371, Percent_Identity=26.4150943396226, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI24308167, Length=480, Percent_Identity=22.2916666666667, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI302148518, Length=241, Percent_Identity=26.5560165975104, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI24497476, Length=425, Percent_Identity=23.5294117647059, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI20070188, Length=425, Percent_Identity=23.5294117647059, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI90669191, Length=383, Percent_Identity=26.3707571801567, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI24497497, Length=379, Percent_Identity=25.8575197889182, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1788074, Length=364, Percent_Identity=28.5714285714286, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1786229, Length=415, Percent_Identity=27.710843373494, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1788068, Length=466, Percent_Identity=25.1072961373391, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI87082159, Length=411, Percent_Identity=28.4671532846715, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1789207, Length=383, Percent_Identity=22.976501305483, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI87082404, Length=416, Percent_Identity=22.5961538461538, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1789312, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1790463, Length=214, Percent_Identity=27.5700934579439, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87082231, Length=181, Percent_Identity=25.414364640884, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI32564663, Length=493, Percent_Identity=23.9350912778905, Blast_Score=85, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17565976, Length=340, Percent_Identity=26.4705882352941, Blast_Score=82, Evalue=7e-16, Organism=Caenorhabditis elegans, GI32565921, Length=352, Percent_Identity=26.7045454545455, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193202825, Length=383, Percent_Identity=23.2375979112272, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71986689, Length=383, Percent_Identity=23.2375979112272, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71988651, Length=292, Percent_Identity=25.3424657534247, Blast_Score=72, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6320766, Length=380, Percent_Identity=23.1578947368421, Blast_Score=64, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6320705, Length=409, Percent_Identity=23.960880195599, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6319956, Length=384, Percent_Identity=23.4375, Blast_Score=63, Evalue=1e-10, Organism=Drosophila melanogaster, GI24640198, Length=235, Percent_Identity=28.936170212766, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI24640196, Length=235, Percent_Identity=28.936170212766, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI24640200, Length=235, Percent_Identity=28.936170212766, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI24649622, Length=431, Percent_Identity=21.8097447795824, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI161077756, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 52112; Mature: 52112
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHHHHHCCCHHHHHHHHHHH IGVGLFFDMYEIFLVSTIGSALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGVGAIYPVADSFLSEILPKDKR CCCEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC GRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPES CCEEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARY CCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHH VMLAIFHLLQGFGYYGFGTLAGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWI HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH ERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCASNVFSNAYHVYQAEIFPARVR HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHH STAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRS HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QDEINPV CCCCCCC >Mature Secondary Structure MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHHHHHCCCHHHHHHHHHHH IGVGLFFDMYEIFLVSTIGSALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGVGAIYPVADSFLSEILPKDKR CCCEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC GRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPES CCEEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARY CCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHH VMLAIFHLLQGFGYYGFGTLAGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWI HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH ERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCASNVFSNAYHVYQAEIFPARVR HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHH STAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRS HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QDEINPV CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]