Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

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The map label for this gene is yyaJ [H]

Identifier: 116689718

GI number: 116689718

Start: 1884072

End: 1885535

Strand: Reverse

Name: yyaJ [H]

Synonym: Bcen2424_1696

Alternate gene names: 116689718

Gene position: 1885535-1884072 (Counterclockwise)

Preceding gene: 116689721

Following gene: 116689712

Centisome position: 54.12

GC content: 66.8

Gene sequence:

>1464_bases
ATGAACAGCCAATCCCTCGACCTAGGCGGCCATGCCGGCGGCCCTGAATCCGCCCGGCCGCCGGCCGCTTCAGCAGGCGC
CGGCGCCGATGCGGCAGCCCTTCCCGGCCGCCGCGTCACGCTCGGCGATTTCATGGACGATCTGCCGGTCGGCGCATTGC
ATCGATTCGTCGTCTGGGTAATCGGCGTCGGGCTGTTCTTCGACATGTACGAGATTTTTCTCGTCAGTACGATCGGCTCC
GCGTTGCAGCACGAATACGGGCTGAGCCGGCAAAGCGCCGATTTCAAGCTATTGCTGGCGTCGGCGTTCATCGGCATGTT
CGTCGGCGCGATGTGCCTTGGCAGCCTGGCCGACCGCATCGGCCGGCGCAAGGCGTTCCTGCTCACGCTCGGGTGGTACA
GCGCGTTCTCGCTGGTCGGTGCGTTTTCCGTGAACGCCGACATGCTCGTGGCATGCCGGTTCCTGACGGGCATCGGCGTC
GGCGCGATCTATCCGGTCGCCGACAGCTTCCTGTCCGAAATCCTGCCGAAGGACAAGCGCGGGCGGCTCGCCGCGTGGGC
CTACACGACTTCGTATGTCGCGGTGCCGCTCGTCGGCTTTCTCGCGCTGTGGCTGAATCCGTTGCAGGTGGCGGGCGTCG
CCGGCTGGCGCATCATCCTCGCGATCGGCAGCCTCGGCGCCGTGTACGTGCTGCTCGTCCAGCACCGGCTGCCGGAAAGC
CCGCGCTGGCTGCTCGCGCAAGGCCGCACGGCCGATGCGCACGCGGCGCTGCGGCGTTTCGCGGAAAGCGCCGGCGTGCG
TGTGCCCGAACACTTCGCGGAACCGGTCGAGCCGCAGCGGCCGCTCGGGCTCGGCGAGCGCATCGCGCTGCTACGCCGCC
AACCGTATGGCGCCCGCTATGTGATGCTGGCGATCTTTCACCTGTTGCAGGGCTTCGGCTACTACGGGTTCGGCACGCTG
GCCGGCACGGTCGTGAAAAGCCGCGGCTTCGACGTGACGGACAGCACGCTGTTCATCGCGCTGTCGTTCATCGGCTATCC
GATCGGCTCGCTGCTGTCGATTCCGCTGCTCAACTGGATCGAGCGCCGCACGCTCGTGATCGTGTCGATCCTGTCGATCG
CGGTGTTCGGGCTGTGCTTCGCGTATTCGGGCAATACGATGCTGATCGTCGGCTTCGGGTTCCTGACGACCTGTGCGTCG
AACGTGTTCAGCAACGCGTATCACGTGTATCAGGCCGAGATTTTCCCGGCGCGCGTGCGCTCGACGGCGATCGGCAGTAC
CTATGCGCTGTCGCGGATCGTGAGCGGCGCGCTGCCGTTCGTGTTGCTGCCGGTGCTCGGCCACTACGGCGCGGGCGCGA
TGTTCGGCGTGATCTCGGTCGCACTCGGCATCGTCGCCGTCACGCTGCGCGTGCTCGGGCCGCTGACCACGCGGCGCAGC
CAGGACGAGATCAATCCGGTTTGA

Upstream 100 bases:

>100_bases
GCGCCCGGCGATGCCTGCCGTCGCGTCGCGTGGCCGGCGCGTTACACCGGTCGCGAACGCCAGGCCCAGCGCCACGGCAT
ATCGATAATCAGGAGACACG

Downstream 100 bases:

>100_bases
CGCGGCGATCGGCACGGGGCGCACGGAACCGCACCCCGTGCGTCGCGTTCCATCGCATTCACCGCGCCGACATGAAATCG
AACAGCTTCGCGATGTCGGT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWVIGVGLFFDMYEIFLVSTIGS
ALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRIGRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGV
GAIYPVADSFLSEILPKDKRGRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPES
PRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARYVMLAIFHLLQGFGYYGFGTL
AGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWIERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCAS
NVFSNAYHVYQAEIFPARVRSTAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRS
QDEINPV

Sequences:

>Translated_487_residues
MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWVIGVGLFFDMYEIFLVSTIGS
ALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRIGRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGV
GAIYPVADSFLSEILPKDKRGRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPES
PRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARYVMLAIFHLLQGFGYYGFGTL
AGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWIERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCAS
NVFSNAYHVYQAEIFPARVRSTAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRS
QDEINPV
>Mature_487_residues
MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWVIGVGLFFDMYEIFLVSTIGS
ALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRIGRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGV
GAIYPVADSFLSEILPKDKRGRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPES
PRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARYVMLAIFHLLQGFGYYGFGTL
AGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWIERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCAS
NVFSNAYHVYQAEIFPARVRSTAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRS
QDEINPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Homo sapiens, GI213021148, Length=488, Percent_Identity=24.5901639344262, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI4507005, Length=412, Percent_Identity=25.2427184466019, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI7662270, Length=314, Percent_Identity=23.8853503184713, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI24497490, Length=408, Percent_Identity=24.7549019607843, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI262399383, Length=256, Percent_Identity=23.4375, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI166064021, Length=401, Percent_Identity=25.9351620947631, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI216548223, Length=180, Percent_Identity=28.3333333333333, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI73695465, Length=266, Percent_Identity=23.6842105263158, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI166197673, Length=371, Percent_Identity=26.4150943396226, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI24308167, Length=480, Percent_Identity=22.2916666666667, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI302148518, Length=241, Percent_Identity=26.5560165975104, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI24497476, Length=425, Percent_Identity=23.5294117647059, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI20070188, Length=425, Percent_Identity=23.5294117647059, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI90669191, Length=383, Percent_Identity=26.3707571801567, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI24497497, Length=379, Percent_Identity=25.8575197889182, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1788074, Length=364, Percent_Identity=28.5714285714286, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1786229, Length=415, Percent_Identity=27.710843373494, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788068, Length=466, Percent_Identity=25.1072961373391, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87082159, Length=411, Percent_Identity=28.4671532846715, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1789207, Length=383, Percent_Identity=22.976501305483, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082404, Length=416, Percent_Identity=22.5961538461538, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789312, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1790463, Length=214, Percent_Identity=27.5700934579439, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082231, Length=181, Percent_Identity=25.414364640884, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32564663, Length=493, Percent_Identity=23.9350912778905, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17565976, Length=340, Percent_Identity=26.4705882352941, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI32565921, Length=352, Percent_Identity=26.7045454545455, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193202825, Length=383, Percent_Identity=23.2375979112272, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71986689, Length=383, Percent_Identity=23.2375979112272, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71988651, Length=292, Percent_Identity=25.3424657534247, Blast_Score=72, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6320766, Length=380, Percent_Identity=23.1578947368421, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6320705, Length=409, Percent_Identity=23.960880195599, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6319956, Length=384, Percent_Identity=23.4375, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24640198, Length=235, Percent_Identity=28.936170212766, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24640196, Length=235, Percent_Identity=28.936170212766, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24640200, Length=235, Percent_Identity=28.936170212766, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24649622, Length=431, Percent_Identity=21.8097447795824, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161077756, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 52112; Mature: 52112

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCC
>Mature Secondary Structure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CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 8011666; 9384377 [H]