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The map label for this gene is srpC [H]

Identifier: 116689646

GI number: 116689646

Start: 1791117

End: 1792577

Strand: Direct

Name: srpC [H]

Synonym: Bcen2424_1624

Alternate gene names: 116689646

Gene position: 1791117-1792577 (Clockwise)

Preceding gene: 116689645

Following gene: 116689647

Centisome position: 51.41

GC content: 71.8

Gene sequence:

>1461_bases
ATGTTTGCGCTGAATGCACGTGGCGCGCTGCGGGCACCGCTCGCGCTGGCCGCCGCGCTCGCGCTCGCCGGGTGTTCGCT
CGCGCCGCGTTACGAGCGTCCGGCCGCGCCGGTGCCGGCGACCTATACGCCGGTCGACGGCGGCACGACGCCGGCCGCCG
AACCGGCCACCGCGCAGGATGCCGCGCTGCTCGACGACTGGCATGCGTATTTCACCGATCCGGCGCTGCAGGCGTGGATC
GACGCGGCGCTCGCGAACAACCGCGACCTACGGATCGCCGCCGGCCGGCTCGAGGAGGCACGTGCGCTGTACGGCGTGCA
GCGCGCGGACCGGATGCCGTCGGTCGATGCGAATCTCGGCTATGAACGCGCGCGCCAGTACGACCCGGTCGTGCGCGAAA
GCGCGATCAGCGGGCTGTATCGCGCGGGTGTCGGCGTCAGCGCGTACGAGCTCGACCTGTTCGGCCGCGTGCGCAGCCTG
TCCGAGGCGGCGCTCGCCGACTATTTCGCGACGGCCGATGCGCAGCGCACGGTCCGCATCGGCGTGATCGCCGAAGTGGC
GGGCGCATACGTTTCCGAACGATCGTTGCACGAGCAACTGGCGCTCGCCCAGCGCACGCTCGATGCGCGCGAGCGGATGG
CCGCGCTCACGCAACGCCGCTATGCCGCCGGCACGAGCGACGCGATCGAGCTGCGTTCGGCCGAGATGCTGGTGGCGTCC
GCGCGCGCGTCGCAAGCCGCGCTGCAGCGCGAGCATGCGCAGGCCGTCCGCGCGCTGCAACTGCTGGCGGGCGATTTCGC
GCGCAACGTGCCCGACGACGCGACCGCGCTTGACACGCTGTCGATCGCGCCCGTGGCGCCGGGTGCGCCGAGCCAGTTGC
TCGAACGGCGGCCGGACATCCGGCAGGCCGAGGGGCGGCTGAAGGCCGCGAACGCGAACATCGGCGCGGCGCGCGCGGCG
TTCTTCCCGCGCATCGCGTTGACGACCGACTACGGCTCGGTGAGCGACGCGTTCTCGAACCTGTTCGCGGCCGGCACGAG
CGTATGGACGTTCGCACCGCGCATCACGCTGCCGATCTTCGCGGGCGGACGCAATCGCGCGAACCTCGACGTTGCGCACG
CGCGCAAGGACATTGCGGTCGCCGAATACGAGAAGGCAGTGCAGACCGCGTTTCGCGAAGTGGCCGATGCGTTCGCCGCG
CGCGACTGGATCGACCGGCAGCTGACCGCGCAGCAGGACGTGTATGCGGCGGACGGCGCGCGGCTGAAGCTCGCGGAGCG
TCGTTATGCGGGTGGTGTCGCGACCTATCTCGAACTGCTCGACGCGCAGCGCAGCACGTACGAGTCGGGGCAGGAGCTGA
TCCGGCTCAGGCAGCTCAGGCTGGCGAATGCGATCGCGCTGTATCGCGCGCTCGGCGGCGGCTGGGCGCCGGCCACGGCG
GAGGCCGCGGCTTCCGCGTGA

Upstream 100 bases:

>100_bases
TCGTCCCGCTGTTTTTCGTGACCGTCGGCCGCCTGTTCGACGTCGGCCCGCGCCGGCGCGGTGGGGCGCAGCCGACGACG
ATGGAGGGTTCGCAACCATG

Downstream 100 bases:

>100_bases
CGGCCGATGCGTCGCCCGACGCCGCGGCGTGTCGGGTGGCATGACGGCGGTCGCGCGCGTCGACGTGCGACCGCCGCTTC
GACAGGGCATGCTGCCCGTC

Product: RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MFALNARGALRAPLALAAALALAGCSLAPRYERPAAPVPATYTPVDGGTTPAAEPATAQDAALLDDWHAYFTDPALQAWI
DAALANNRDLRIAAGRLEEARALYGVQRADRMPSVDANLGYERARQYDPVVRESAISGLYRAGVGVSAYELDLFGRVRSL
SEAALADYFATADAQRTVRIGVIAEVAGAYVSERSLHEQLALAQRTLDARERMAALTQRRYAAGTSDAIELRSAEMLVAS
ARASQAALQREHAQAVRALQLLAGDFARNVPDDATALDTLSIAPVAPGAPSQLLERRPDIRQAEGRLKAANANIGAARAA
FFPRIALTTDYGSVSDAFSNLFAAGTSVWTFAPRITLPIFAGGRNRANLDVAHARKDIAVAEYEKAVQTAFREVADAFAA
RDWIDRQLTAQQDVYAADGARLKLAERRYAGGVATYLELLDAQRSTYESGQELIRLRQLRLANAIALYRALGGGWAPATA
EAAASA

Sequences:

>Translated_486_residues
MFALNARGALRAPLALAAALALAGCSLAPRYERPAAPVPATYTPVDGGTTPAAEPATAQDAALLDDWHAYFTDPALQAWI
DAALANNRDLRIAAGRLEEARALYGVQRADRMPSVDANLGYERARQYDPVVRESAISGLYRAGVGVSAYELDLFGRVRSL
SEAALADYFATADAQRTVRIGVIAEVAGAYVSERSLHEQLALAQRTLDARERMAALTQRRYAAGTSDAIELRSAEMLVAS
ARASQAALQREHAQAVRALQLLAGDFARNVPDDATALDTLSIAPVAPGAPSQLLERRPDIRQAEGRLKAANANIGAARAA
FFPRIALTTDYGSVSDAFSNLFAAGTSVWTFAPRITLPIFAGGRNRANLDVAHARKDIAVAEYEKAVQTAFREVADAFAA
RDWIDRQLTAQQDVYAADGARLKLAERRYAGGVATYLELLDAQRSTYESGQELIRLRQLRLANAIALYRALGGGWAPATA
EAAASA
>Mature_486_residues
MFALNARGALRAPLALAAALALAGCSLAPRYERPAAPVPATYTPVDGGTTPAAEPATAQDAALLDDWHAYFTDPALQAWI
DAALANNRDLRIAAGRLEEARALYGVQRADRMPSVDANLGYERARQYDPVVRESAISGLYRAGVGVSAYELDLFGRVRSL
SEAALADYFATADAQRTVRIGVIAEVAGAYVSERSLHEQLALAQRTLDARERMAALTQRRYAAGTSDAIELRSAEMLVAS
ARASQAALQREHAQAVRALQLLAGDFARNVPDDATALDTLSIAPVAPGAPSQLLERRPDIRQAEGRLKAANANIGAARAA
FFPRIALTTDYGSVSDAFSNLFAAGTSVWTFAPRITLPIFAGGRNRANLDVAHARKDIAVAEYEKAVQTAFREVADAFAA
RDWIDRQLTAQQDVYAADGARLKLAERRYAGGVATYLELLDAQRSTYESGQELIRLRQLRLANAIALYRALGGGWAPATA
EAAASA

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=462, Percent_Identity=40.4761904761905, Blast_Score=330, Evalue=2e-91,
Organism=Escherichia coli, GI2367348, Length=424, Percent_Identity=24.7641509433962, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 51968; Mature: 51968

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFALNARGALRAPLALAAALALAGCSLAPRYERPAAPVPATYTPVDGGTTPAAEPATAQD
CEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
AALLDDWHAYFTDPALQAWIDAALANNRDLRIAAGRLEEARALYGVQRADRMPSVDANLG
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCC
YERARQYDPVVRESAISGLYRAGVGVSAYELDLFGRVRSLSEAALADYFATADAQRTVRI
HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
GVIAEVAGAYVSERSLHEQLALAQRTLDARERMAALTQRRYAAGTSDAIELRSAEMLVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ARASQAALQREHAQAVRALQLLAGDFARNVPDDATALDTLSIAPVAPGAPSQLLERRPDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEECCCCCCCHHHHHHCCCCH
RQAEGRLKAANANIGAARAAFFPRIALTTDYGSVSDAFSNLFAAGTSVWTFAPRITLPIF
HHHCCCEEECCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCHHEEECCCEEEEEE
AGGRNRANLDVAHARKDIAVAEYEKAVQTAFREVADAFAARDWIDRQLTAQQDVYAADGA
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
RLKLAERRYAGGVATYLELLDAQRSTYESGQELIRLRQLRLANAIALYRALGGGWAPATA
EEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EAAASA
HHHCCC
>Mature Secondary Structure
MFALNARGALRAPLALAAALALAGCSLAPRYERPAAPVPATYTPVDGGTTPAAEPATAQD
CEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
AALLDDWHAYFTDPALQAWIDAALANNRDLRIAAGRLEEARALYGVQRADRMPSVDANLG
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCC
YERARQYDPVVRESAISGLYRAGVGVSAYELDLFGRVRSLSEAALADYFATADAQRTVRI
HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
GVIAEVAGAYVSERSLHEQLALAQRTLDARERMAALTQRRYAAGTSDAIELRSAEMLVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ARASQAALQREHAQAVRALQLLAGDFARNVPDDATALDTLSIAPVAPGAPSQLLERRPDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEECCCCCCCHHHHHHCCCCH
RQAEGRLKAANANIGAARAAFFPRIALTTDYGSVSDAFSNLFAAGTSVWTFAPRITLPIF
HHHCCCEEECCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCHHEEECCCEEEEEE
AGGRNRANLDVAHARKDIAVAEYEKAVQTAFREVADAFAARDWIDRQLTAQQDVYAADGA
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
RLKLAERRYAGGVATYLELLDAQRSTYESGQELIRLRQLRLANAIALYRALGGGWAPATA
EEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EAAASA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]