Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is arpR [H]
Identifier: 116689643
GI number: 116689643
Start: 1785960
End: 1786607
Strand: Reverse
Name: arpR [H]
Synonym: Bcen2424_1621
Alternate gene names: 116689643
Gene position: 1786607-1785960 (Counterclockwise)
Preceding gene: 116689652
Following gene: 116689642
Centisome position: 51.28
GC content: 68.21
Gene sequence:
>648_bases ATGGCCCGCAAGACCCGGGAAGAATCGCTCGCCATCAAGCACCGGATCCTCGACGCCGCCGAGCTCGTGCTGCTCGAAAG AGGCGTCGCGCAAACCGCGATGGCGGACCTCGCCGAGGCCGCCGGGATGTCGCGGGGCGCCGTCTACGGCCACTACCGCA ACAAGATGGAAGTGTGTCTGGCGATGTGCGACCGCGCGTTCGCGCGCACGTCGGAAGGGTTCGACGCGGGCGACGGCCTG CCGCCGTTCGCGACGCTGCGGCGTGCCGCGTCGCACTATCTGCAGGAATGCGGCGAGCCTGGCCCGATGCAGCGCGTGCT CGTGATTCTCTATACGAAGTGCGAGCAAAGCGAGGAGAACGGCGCGCTGCAGCGGCGCCGCATGCTGCTCGAGCTGCAGA TGCTGCGGATCACGAAGGCGCTGCTGCGTCGCGCGATCGCCGCCGGCGAACTTGCCGTCGATCTCGACGTGCACCTCGCC GCCGTCTATCTCGTGTCGCTGCTCGAAGGCGTGTTCGCGTCGATGATCTGGACCAACCGGTTGCGCGGCAACCTGTGGAA CGACGCCGAGGCGATGCTCGACGCCGGCTTCGACGCCGTGCGCACCTCCGCCGCTCTGCGCCGACGCGCGCAAAAATTGC CGGACTGA
Upstream 100 bases:
>100_bases CCGATTATAATCAGTCACGACTGATTAAATACGCGCGCTTTCAATCTGGCTGACACACTGTCTCAATAAAACGACAGCGA ACTGTAAGGAATTTCACGAC
Downstream 100 bases:
>100_bases CGAGAATCGTCGTAACAAATGCTGATTTAACCCGACTTACCGCACTGCGAAACGAACGAGCTGACCCTCTTTAAAATTTT TAACGTTTCGCGGAACATCG
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Antibiotic efflux pump ArpABC operon regulator [H]
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MARKTREESLAIKHRILDAAELVLLERGVAQTAMADLAEAAGMSRGAVYGHYRNKMEVCLAMCDRAFARTSEGFDAGDGL PPFATLRRAASHYLQECGEPGPMQRVLVILYTKCEQSEENGALQRRRMLLELQMLRITKALLRRAIAAGELAVDLDVHLA AVYLVSLLEGVFASMIWTNRLRGNLWNDAEAMLDAGFDAVRTSAALRRRAQKLPD
Sequences:
>Translated_215_residues MARKTREESLAIKHRILDAAELVLLERGVAQTAMADLAEAAGMSRGAVYGHYRNKMEVCLAMCDRAFARTSEGFDAGDGL PPFATLRRAASHYLQECGEPGPMQRVLVILYTKCEQSEENGALQRRRMLLELQMLRITKALLRRAIAAGELAVDLDVHLA AVYLVSLLEGVFASMIWTNRLRGNLWNDAEAMLDAGFDAVRTSAALRRRAQKLPD >Mature_214_residues ARKTREESLAIKHRILDAAELVLLERGVAQTAMADLAEAAGMSRGAVYGHYRNKMEVCLAMCDRAFARTSEGFDAGDGLP PFATLRRAASHYLQECGEPGPMQRVLVILYTKCEQSEENGALQRRRMLLELQMLRITKALLRRAIAAGELAVDLDVHLAA VYLVSLLEGVFASMIWTNRLRGNLWNDAEAMLDAGFDAVRTSAALRRRAQKLPD
Specific function: Probable regulatory protein for the antibiotic efflux pump arpABC operon. May function as a repressor [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789664, Length=204, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786669, Length=180, Percent_Identity=26.1111111111111, Blast_Score=70, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR015893 - InterPro: IPR011075 - InterPro: IPR013572 - InterPro: IPR001647 [H]
Pfam domain/function: PF08361 TetR_C_2; PF00440 TetR_N [H]
EC number: NA
Molecular weight: Translated: 23846; Mature: 23715
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKTREESLAIKHRILDAAELVLLERGVAQTAMADLAEAAGMSRGAVYGHYRNKMEVCL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AMCDRAFARTSEGFDAGDGLPPFATLRRAASHYLQECGEPGPMQRVLVILYTKCEQSEEN HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH GALQRRRMLLELQMLRITKALLRRAIAAGELAVDLDVHLAAVYLVSLLEGVFASMIWTNR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRGNLWNDAEAMLDAGFDAVRTSAALRRRAQKLPD HCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ARKTREESLAIKHRILDAAELVLLERGVAQTAMADLAEAAGMSRGAVYGHYRNKMEVCL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AMCDRAFARTSEGFDAGDGLPPFATLRRAASHYLQECGEPGPMQRVLVILYTKCEQSEEN HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH GALQRRRMLLELQMLRITKALLRRAIAAGELAVDLDVHLAAVYLVSLLEGVFASMIWTNR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRGNLWNDAEAMLDAGFDAVRTSAALRRRAQKLPD HCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11160799 [H]