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The map label for this gene is rbsC [H]

Identifier: 116689630

GI number: 116689630

Start: 1769217

End: 1770236

Strand: Direct

Name: rbsC [H]

Synonym: Bcen2424_1608

Alternate gene names: 116689630

Gene position: 1769217-1770236 (Clockwise)

Preceding gene: 116689629

Following gene: 116689631

Centisome position: 50.78

GC content: 68.63

Gene sequence:

>1020_bases
ATGACCCAGCCTCCCGTATCCCCGACCGACGCAGGCGCGCAGCAGGACGTGACGGGGCGCCGCGCGCGCACGCTGTCCGG
CACGCGGCTCGGCCTGTCGAACTATCTCGGGCTGGCCGGCGCGCTGGCCGCGATGATCGCGCTGTTCTCGGTGCTGAGCT
CGCATTTCCTGACCTACGACACGTTCAGCACGATCGCGAACCAGATTCCCGATCTCGTCGTGATGTCGGTCGGGATGACC
TTCGTGCTGATCATCGCCGGGATCGACCTGTCGGTCGGCTCGGTGCTCGCGCTCGCCGCGTCGATGGTCAGCGTCGCCGC
GCTGAAATGGCAGTGGGGGCCGCTGCCGGCCGCGCTGATCGGGATCGCGGTCGCGACCGCGACGGGCGCGCTGACGGGCG
CGGTCACGGTGGGCTGGCGGATTCCGTCGTTCATCGTGTCGCTCGGCGTGCTGGAGGCCGCGCGCGGCCTCGCGTACCAG
CTGACGAATTCGCGCACCGCGTATATCGGCGACGCGTTCGATTTCCTGTCGAACCCGATCGCGCTGGGCATTTCGCCGGC
GTTCCTGATCGCGGTCGCGGTGATGATCGCGGCCCAGTTCGTGCTCACGCGCACGGTGTTCGGGCGCTATCTGGTCGGGA
TCGGCACGAACGAGGAAGCGGTGCGGCTTGCCGGGGTTAACCCGAGGCCGTATAAAATCCTCGTATTCGCGCTGATGGGC
GCGCTCGCGGGGCTCGCGTCGCTGTTCCAGATTTCGCGGCTCGAGGCGGCCGATCCGAACGCGGGCGCGGGCCTCGAACT
GCAGGTGATCGCCGCCGTCGTGATCGGCGGCACGAGCCTGATGGGCGGGCGCGGCTCGGTGATCAGCACGTTCTTCGGCG
TGTTGATCATCTCCGTGCTGGCCGCGGGGCTGGCGCAGATCGGGGCGAACGAGCCGACGAAGCGGATCATCACGGGTGCG
GTGATCGTGGTGGCGGTCGTGCTCGATACGTATCGCAGCCGGCGTACGCGCGTGCGGTAA

Upstream 100 bases:

>100_bases
CCGGCTTCGGCCGCGAGACGCCGGCGGCCGCCATGCAGCATCCGGACGCGGGGCAGGCGCGCGGCGCCGCTCCGGGCACT
TCGACGACAGGACCACAGCA

Downstream 100 bases:

>100_bases
AAAGACAGACAGAACAGACCAGAGAGAAACGGGAAATGGCGACGATCAAGGATGTGGCGGCCATGGCGGGCGTGTCGTTT
ACGACCGTCTCGCACGTGGT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTQPPVSPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYDTFSTIANQIPDLVVMSVGMT
FVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATATGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQ
LTNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMG
ALAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGA
VIVVAVVLDTYRSRRTRVR

Sequences:

>Translated_339_residues
MTQPPVSPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYDTFSTIANQIPDLVVMSVGMT
FVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATATGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQ
LTNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMG
ALAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGA
VIVVAVVLDTYRSRRTRVR
>Mature_338_residues
TQPPVSPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYDTFSTIANQIPDLVVMSVGMTF
VLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATATGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMGA
LAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRTRVR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=337, Percent_Identity=35.9050445103858, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=31.7152103559871, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=32.6599326599327, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI145693152, Length=273, Percent_Identity=30.7692307692308, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082395, Length=251, Percent_Identity=33.8645418326693, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=43.0656934306569, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=251, Percent_Identity=31.8725099601594, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=27.6223776223776, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788471, Length=284, Percent_Identity=30.2816901408451, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=24.3589743589744, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34988; Mature: 34856

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPPVSPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYD
CCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALI
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GIAVATATGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQLTNSRTAYIGDAFDFLSNPI
HHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCC
ALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHH
ALAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVL
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRTRVR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQPPVSPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYD
CCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALI
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GIAVATATGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQLTNSRTAYIGDAFDFLSNPI
HHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCC
ALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHH
ALAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVL
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRTRVR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]