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The map label for this gene is rbsC [H]

Identifier: 116689564

GI number: 116689564

Start: 1704946

End: 1705983

Strand: Reverse

Name: rbsC [H]

Synonym: Bcen2424_1542

Alternate gene names: 116689564

Gene position: 1705983-1704946 (Counterclockwise)

Preceding gene: 116689565

Following gene: 116689563

Centisome position: 48.97

GC content: 68.11

Gene sequence:

>1038_bases
ATGATCAACCCGACCAAGCAGCGGAACCTCGCTTCCGCGACCGCCCATCCGGTCGCCAACCGCACACCCCTGATGCGCGG
CGCCGATCATCGCGCCCGCATGCAATCGCTGATCCGCACGGCCGGCATGCTGCCGGTGCTGCTGGTCCTGTGCGTCGGCT
TCGGCTTCCTGACCGATGGCTTCTTCACGCTGCAGAACCTGTCGATCGTCACGCAGCAGGCATCGATCAACATCGTGCTC
GCCGCCGGCATGACGTTCGTGATCCTGACGGGCGGCATCGACCTGTCGGTCGGCTCGGTGCTCGCCGCCGCGGCCGTCGC
GGCGCTCATCGCGTCGACCATTCCCGGCTGGGGCTGGCTCGGCGTGCCGTTCGCGCTCGTCGTCGGCCTCGTGTTCGGCG
CGATCAACGGCGGGCTGATCTCGTTCCTGCGCCTGCCGCCGTTCATCGTCACGCTCGGCGCAATGACTGCCGTGCGCGGC
GTCGCACGCCTGATCGGCAACGACACGACCGTGTTCAACCCGCAACTGCCGTTCGCGTTCATCGGCAACGGCTCGATCCT
CGGCGTGCCGTGGCTCGTCGTGATCGCGTGCGCGGTGATCGCGATCTCGTGGTTCATCCTGCGCCGCACGGTGCTCGGGA
TGCGGATCTATTCGGTCGGCGGCAACCCGGAAGCCGCGCGTCTGTCGGGCATCAACGTACGGGCGATCCAGATGTTCGTG
TATGCGGCGTCGGGCCTGCTCGCCGGCCTCGGCGCGGTGATGTCGGCCGCACGCCTGTATGCGGCCAACGGCCTGCAGCT
CGGCCAGTCGTACGAGCTCGACGCGATCGCCGCGGTGATCCTCGGCGGCACGAGCTTCGTCGGCGGCGTCGGCTCGATCG
TCGGCACGCTGATCGGCGCGCTGATCATCGCGGTGCTGACCAACGGGCTCGTGCTGCTCGGCGTGTCCGATATCTGGCAA
TACATCATCAAGGGGCTGGTGATCATCGGCGCGGTCGCGCTCGACCGCTATCGCCAGCGCGACTCGGCCCGTACCTGA

Upstream 100 bases:

>100_bases
GAAGCGATCATCGCGCTCGCCACCGGCTCGCAGGCCGAACTGGCCGACGCGCACTGAGCGCCGCCCCTTTTCATTTCACT
CTCACATTCAGGCTACCGAA

Downstream 100 bases:

>100_bases
CTCCCTTCCCTCATCGTTCAACCATCGGCGCGCAGGCAGGTCCTCCTGCGCGCGTTCACCAACAGACCTCCCGGAGACAC
AACGACATGTTCAAGCACAC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MINPTKQRNLASATAHPVANRTPLMRGADHRARMQSLIRTAGMLPVLLVLCVGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVAALIASTIPGWGWLGVPFALVVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRG
VARLIGNDTTVFNPQLPFAFIGNGSILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART

Sequences:

>Translated_345_residues
MINPTKQRNLASATAHPVANRTPLMRGADHRARMQSLIRTAGMLPVLLVLCVGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVAALIASTIPGWGWLGVPFALVVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRG
VARLIGNDTTVFNPQLPFAFIGNGSILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART
>Mature_345_residues
MINPTKQRNLASATAHPVANRTPLMRGADHRARMQSLIRTAGMLPVLLVLCVGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVAALIASTIPGWGWLGVPFALVVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRG
VARLIGNDTTVFNPQLPFAFIGNGSILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=48.0132450331126, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=38.4868421052632, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788896, Length=341, Percent_Identity=34.0175953079179, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI145693152, Length=302, Percent_Identity=33.7748344370861, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87082395, Length=293, Percent_Identity=36.8600682593857, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI145693214, Length=264, Percent_Identity=40.1515151515151, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788471, Length=338, Percent_Identity=36.6863905325444, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=46.3768115942029, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=32.1799307958478, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787794, Length=313, Percent_Identity=30.3514376996805, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35824; Mature: 35824

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINPTKQRNLASATAHPVANRTPLMRGADHRARMQSLIRTAGMLPVLLVLCVGFGFLTDG
CCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
FFTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAAAAVAALIASTIPGWGWL
HHHHHHHHHEEECCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
GVPFALVVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRGVARLIGNDTTVFNPQLPFAF
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEE
IGNGSILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHCCCCCHHHHHHHH
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LIIAVLTNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQRDSART
HHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MINPTKQRNLASATAHPVANRTPLMRGADHRARMQSLIRTAGMLPVLLVLCVGFGFLTDG
CCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
FFTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAAAAVAALIASTIPGWGWL
HHHHHHHHHEEECCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
GVPFALVVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRGVARLIGNDTTVFNPQLPFAF
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEE
IGNGSILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHCCCCCHHHHHHHH
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LIIAVLTNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQRDSART
HHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]