Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116689541
Identifier: 116689541
GI number: 116689541
Start: 1680430
End: 1680924
Strand: Direct
Name: 116689541
Synonym: Bcen2424_1519
Alternate gene names: NA
Gene position: 1680430-1680924 (Clockwise)
Preceding gene: 116689540
Following gene: 116689542
Centisome position: 48.23
GC content: 65.45
Gene sequence:
>495_bases ATGACGGCCGTTCGTCCGGCATCCGGCATGCGGCGTCGCCAGCGCGGCGCGACGGCGATCGAGTTTGCGATGGTGCTCCC CGTGTTCTTCCTGATCCTGTACGCGATCATCACGTACGGGATGATCTTCGCGGCCCAGCAAAACCTGACGCTTGCCGCCA CGGAAGGCGCTCGCGCCGCGTTGAACTATCAGCAGGTCGGCGCGGCCGGGTCGGTGCAGGCCGCGCAGCAAGCCGCGCTG GCGGCGCGGGCGCAGGCAGCATGCACGGCCGCGACGAACCTGACCACATGGCTGAAAGGGTCGACATGCTCGCCCACGCA GCAAGGCAGCTGTTCGTACGACCCGACGATGCTGTGCGTGCAGATCACGCTGACTTATCCCTACTCGCAGAGCCCGCTGA TTCCACCGTTTCCGCTGCTCGGTTCGCTGTTGCCGGTGCCGTCGACACTCACCGGAACCGCGATGGTGCAGATCAGCCCG GTCAACATCATATAG
Upstream 100 bases:
>100_bases CGATGCAGATCGCCGGTTTCCGGGCGTCGCCGTATGCCGCGTTTCTCGTGATTCCCGCGGCGCTGTGGTGCCTGTACCGG ATCGCGACGGGGGGAATGCA
Downstream 100 bases:
>100_bases ACGGCAGCAACGGCGTCGTGCCGGGTCGAGGGCGCCCGGTCGGCCATGCTGCGTGGAGAATTCAATCGTGAGTAGCGGGG AAACATAACAACACCATGGC
Product: TadE family protein
Products: NA
Alternate protein names: TadE-Like Protein; Transmembrane Protein; Flp Pilus Assembly Protein TadG
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MTAVRPASGMRRRQRGATAIEFAMVLPVFFLILYAIITYGMIFAAQQNLTLAATEGARAALNYQQVGAAGSVQAAQQAAL AARAQAACTAATNLTTWLKGSTCSPTQQGSCSYDPTMLCVQITLTYPYSQSPLIPPFPLLGSLLPVPSTLTGTAMVQISP VNII
Sequences:
>Translated_164_residues MTAVRPASGMRRRQRGATAIEFAMVLPVFFLILYAIITYGMIFAAQQNLTLAATEGARAALNYQQVGAAGSVQAAQQAAL AARAQAACTAATNLTTWLKGSTCSPTQQGSCSYDPTMLCVQITLTYPYSQSPLIPPFPLLGSLLPVPSTLTGTAMVQISP VNII >Mature_163_residues TAVRPASGMRRRQRGATAIEFAMVLPVFFLILYAIITYGMIFAAQQNLTLAATEGARAALNYQQVGAAGSVQAAQQAALA ARAQAACTAATNLTTWLKGSTCSPTQQGSCSYDPTMLCVQITLTYPYSQSPLIPPFPLLGSLLPVPSTLTGTAMVQISPV NII
Specific function: Unknown
COG id: COG4961
COG function: function code U; Flp pilus assembly protein TadG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17243; Mature: 17112
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVRPASGMRRRQRGATAIEFAMVLPVFFLILYAIITYGMIFAAQQNLTLAATEGARAA CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH LNYQQVGAAGSVQAAQQAALAARAQAACTAATNLTTWLKGSTCSPTQQGSCSYDPTMLCV CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCEEEEE QITLTYPYSQSPLIPPFPLLGSLLPVPSTLTGTAMVQISPVNII EEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCC >Mature Secondary Structure TAVRPASGMRRRQRGATAIEFAMVLPVFFLILYAIITYGMIFAAQQNLTLAATEGARAA CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH LNYQQVGAAGSVQAAQQAALAARAQAACTAATNLTTWLKGSTCSPTQQGSCSYDPTMLCV CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCEEEEE QITLTYPYSQSPLIPPFPLLGSLLPVPSTLTGTAMVQISPVNII EEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA