Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689508
Identifier: 116689508
GI number: 116689508
Start: 1640430
End: 1641638
Strand: Direct
Name: 116689508
Synonym: Bcen2424_1486
Alternate gene names: NA
Gene position: 1640430-1641638 (Clockwise)
Preceding gene: 116689507
Following gene: 116689509
Centisome position: 47.09
GC content: 65.01
Gene sequence:
>1209_bases ATGACTGATCTTCGTCTTACCATGCGGTTCGCTGCAGTGCTCGCCACCGGCGCGCTCGTCGCCGGTTGCGGTACGTCGTC GCCCACGAAAGTGGACTACAAGAGCGATTCGAAATCGAAGGAAGCGTCGCTCGCAGTGCCGCCCAACATGCTCGACGAGA CGGCCGATCAGCGTTCGCTGCCGCCCCAGGGCGGCGCGACTTCCCTGTCCGCGCTCCAGCAGGTCCAGCAGGCCGCGCCT GCGCTGGACACCGTCGCGCCGGCCGTGGCCGGCATGCATATCCAGCGCGACGGCACCGAAAGTTGGCTCGTGATCGACGG CAAGCAGCCCGCCGCGATCTGGCCGCAGGTGCGCCGCTTCTGGCAGGAGCAGGGCTTCCTGCTCGTCGTCGACCAGCGCG ACAAGGGCGTGATGGAAACCGACTGGAACGAAACCCATCCGCAGATCAACGACGGCCTGATCCGCAGCGTGATCTCGAAG GCGATGGGCAATTCGTACGTGACGGCAGAGCGCAACAAGTACCGCACGCGTCTCGATTCGGCGCCGAACGGCGGCACCTA CGTGTTCATCAGCCAGAAGGGCATGCGCGAGGCGATCACCGGTGCGAACAACGATTCGAGCAAGTGGGAACCGAAGCCGA ACGATCCGGCGCTCGAGACGGAATACCTGAAGCGGCTGATGGCCGTGCTCGCGCAGAACGAGCAGCGCGCGAAGAACGGC GAGCCGCCGATCGCGAACATCAAGGACAACGCGGTACCGAAGGACAAGAAGGCCGATGGCGACGCGTCGTCGAAGGCTGC CGCGGCGATCGCTGCCCAGAACGTCTCGCGCACGTCGGCGCAAGGCAATGACGCGGCTGAAGCGTCCGTGCCGTCCGAAG TCACGCTCGGCGAGCCGTACGACCGGTCGTGGCTGCACGTCGGTCTCGCGCTCGATCGCGCGAACTTCACGGTCGACGAT CGCGATCGCTCGAAGGGTCTGTACTTCGTGCGTTACGTCGATCCGAAGGATCTGAGCGCGGCCGAGCAGGGCTTCTGGAG CCAGCTGTTCCACGGCAAGAAGGAAAAGCAGGCGAAGCAGTATCGCGTCAACGTGAAGGCGCTCACGGCCGATCAGACGC GTGTCGCGGTCGTCGACGATGCGGGCGCGATCGATACGTCGTCGCCGGCTCGCCAGATCATGGGGTTGCTTGTGAATCAG CTCCGCTGA
Upstream 100 bases:
>100_bases CTTGGCCGTCGCTTTTTTGCACATCGCAGCGCGGCCCCGGTAAAATGCAAGGTTGATCCACGGAAAGCGCCGTGATTTAG CGGAAGAGGATTCCCCGAAC
Downstream 100 bases:
>100_bases TCCCCGCGTTTTCCGCCCCGTTGAAAAGCCCGCCATCCGGCGGGCTTTTTTCATGGCCGCTCGCCGACGTGTATGCCTGT TCGGTGGGGCCCGTCCCTTC
Product: uncharacterized lipoprotein-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQQAAP ALDTVAPAVAGMHIQRDGTESWLVIDGKQPAAIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVISK AMGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEPKPNDPALETEYLKRLMAVLAQNEQRAKNG EPPIANIKDNAVPKDKKADGDASSKAAAAIAAQNVSRTSAQGNDAAEASVPSEVTLGEPYDRSWLHVGLALDRANFTVDD RDRSKGLYFVRYVDPKDLSAAEQGFWSQLFHGKKEKQAKQYRVNVKALTADQTRVAVVDDAGAIDTSSPARQIMGLLVNQ LR
Sequences:
>Translated_402_residues MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQQAAP ALDTVAPAVAGMHIQRDGTESWLVIDGKQPAAIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVISK AMGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEPKPNDPALETEYLKRLMAVLAQNEQRAKNG EPPIANIKDNAVPKDKKADGDASSKAAAAIAAQNVSRTSAQGNDAAEASVPSEVTLGEPYDRSWLHVGLALDRANFTVDD RDRSKGLYFVRYVDPKDLSAAEQGFWSQLFHGKKEKQAKQYRVNVKALTADQTRVAVVDDAGAIDTSSPARQIMGLLVNQ LR >Mature_401_residues TDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSLPPQGGATSLSALQQVQQAAPA LDTVAPAVAGMHIQRDGTESWLVIDGKQPAAIWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVISKA MGNSYVTAERNKYRTRLDSAPNGGTYVFISQKGMREAITGANNDSSKWEPKPNDPALETEYLKRLMAVLAQNEQRAKNGE PPIANIKDNAVPKDKKADGDASSKAAAAIAAQNVSRTSAQGNDAAEASVPSEVTLGEPYDRSWLHVGLALDRANFTVDDR DRSKGLYFVRYVDPKDLSAAEQGFWSQLFHGKKEKQAKQYRVNVKALTADQTRVAVVDDAGAIDTSSPARQIMGLLVNQL R
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43710; Mature: 43579
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSL CCCHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCCCCEECCCCHHHHHHHHHCCC PPQGGATSLSALQQVQQAAPALDTVAPAVAGMHIQRDGTESWLVIDGKQPAAIWPQVRRF CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCEEEEECCCCEEEEEECCCCCHHHHHHHHH WQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVISKAMGNSYVTAERNKYRTRLDS HHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCC APNGGTYVFISQKGMREAITGANNDSSKWEPKPNDPALETEYLKRLMAVLAQNEQRAKNG CCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCC EPPIANIKDNAVPKDKKADGDASSKAAAAIAAQNVSRTSAQGNDAAEASVPSEVTLGEPY CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCC DRSWLHVGLALDRANFTVDDRDRSKGLYFVRYVDPKDLSAAEQGFWSQLFHGKKEKQAKQ CCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH YRVNVKALTADQTRVAVVDDAGAIDTSSPARQIMGLLVNQLR HEEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure TDLRLTMRFAAVLATGALVAGCGTSSPTKVDYKSDSKSKEASLAVPPNMLDETADQRSL CCHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCCCCEECCCCHHHHHHHHHCCC PPQGGATSLSALQQVQQAAPALDTVAPAVAGMHIQRDGTESWLVIDGKQPAAIWPQVRRF CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCEEEEECCCCEEEEEECCCCCHHHHHHHHH WQEQGFLLVVDQRDKGVMETDWNETHPQINDGLIRSVISKAMGNSYVTAERNKYRTRLDS HHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCC APNGGTYVFISQKGMREAITGANNDSSKWEPKPNDPALETEYLKRLMAVLAQNEQRAKNG CCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCC EPPIANIKDNAVPKDKKADGDASSKAAAAIAAQNVSRTSAQGNDAAEASVPSEVTLGEPY CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCC DRSWLHVGLALDRANFTVDDRDRSKGLYFVRYVDPKDLSAAEQGFWSQLFHGKKEKQAKQ CCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH YRVNVKALTADQTRVAVVDDAGAIDTSSPARQIMGLLVNQLR HEEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]